PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G035400.1.p
Common NameGLYMA_17G035400, LOC100808190
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 399aa    MW: 43560.8 Da    PI: 5.9686
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G035400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.43.1e-33211269159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK vk+s++prsYYrCt+a+C vkk+vers+edp+vv++tYeg+H+h+
  Glyma.17G035400.1.p 211 LDDGYRWRKYGQKAVKNSPHPRSYYRCTTATCGVKKRVERSSEDPTVVVTTYEGQHTHP 269
                          59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.5E-35196271IPR003657WRKY domain
SuperFamilySSF1182902.75E-29203271IPR003657WRKY domain
PROSITE profilePS5081132.156206271IPR003657WRKY domain
SMARTSM007743.5E-39211270IPR003657WRKY domain
PfamPF031068.4E-27212269IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MEEKREKEKN SKSSSSTMAN SVAFSDEIPN MSMSFPFSPA FSSSIFDMMP PPPPSSSHDP  60
KAPNFANSFM DLLAVPADYY TPSLFDWSQN TAPTSAPPPS TTQINHPLPS PASSNVPDGS  120
EVLNTPASPN SSSISSSSNE AAAATTANKT TGNDNEEEED ETAIDATAGR EEEDHQDQDK  180
TKKQLKPKKK NQKKQREPRF AFMTKSEVDH LDDGYRWRKY GQKAVKNSPH PRSYYRCTTA  240
TCGVKKRVER SSEDPTVVVT TYEGQHTHPC PATSRASFGF MHSEASGFGP TSGLGSAHFM  300
LQQQQQFRDQ AQAQAAMLYN STSSSLSLPL NVVNSASCVN NSYANTSSLS GFLQGQENHQ  360
RGFVPSRVVA PHIFLRDNGL LQDIVPTQMG NEENEDRV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-272042721078Probable WRKY transcription factor 4
2lex_A2e-272042721078Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.305860.0hypocotyl| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G035400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-73AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003550853.10.0WRKY transcription factor 23
RefseqXP_028211761.10.0WRKY transcription factor 23-like isoform X2
TrEMBLA0A445G1A20.0A0A445G1A2_GLYSO; WRKY transcription factor 23 isoform A
TrEMBLI1MRS90.0I1MRS9_SOYBN; Uncharacterized protein
STRINGGLYMA17G03950.40.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.18e-45WRKY DNA-binding protein 48