PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G031900.1.p
Common NameGLYMA_17G031900, LOC100807130
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CAMTA
Protein Properties Length: 923aa    MW: 103870 Da    PI: 7.6562
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G031900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1164.41.9e-51311463117
                 CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 
                          +e ++rwl+++ei+a+L n++ +++  ++ + pksg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+++n
  Glyma.17G031900.1.p  31 EEaRTRWLRPNEIHAMLCNYKYFTINVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDN 120
                          4559************************************************************************************** PP

                 CG-1  92 ptfqrrcywlLeeelekivlvhylev 117
                          p+f rrcywlL++++e+ivlvhy+e 
  Glyma.17G031900.1.p 121 PNFVRRCYWLLDKSMEHIVLVHYREI 146
                          ***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143776.88826152IPR005559CG-1 DNA-binding domain
SMARTSM010762.7E-7529147IPR005559CG-1 DNA-binding domain
PfamPF038591.2E-4532145IPR005559CG-1 DNA-binding domain
SuperFamilySSF812962.17E-14369456IPR014756Immunoglobulin E-set
CDDcd002043.22E-16553663No hitNo description
SuperFamilySSF484033.58E-19553668IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.7E-18553667IPR020683Ankyrin repeat-containing domain
PfamPF127962.4E-8554633IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.547571663IPR020683Ankyrin repeat-containing domain
SMARTSM002481.2E-5604633IPR002110Ankyrin repeat
PROSITE profilePS5008811.461604636IPR002110Ankyrin repeat
SMARTSM00248940643672IPR002110Ankyrin repeat
SMARTSM000156.9767789IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500966.559769797IPR000048IQ motif, EF-hand binding site
PfamPF006120.03770788IPR000048IQ motif, EF-hand binding site
SMARTSM000153.4790812IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.163791815IPR000048IQ motif, EF-hand binding site
PfamPF006120.0039795811IPR000048IQ motif, EF-hand binding site
SMARTSM0001511871893IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.206873901IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001077Molecular Functiontranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 923 aa     Download sequence    Send to blast
MANNLAAQQL VGSEIHGFHT LQDLDVGSIM EEARTRWLRP NEIHAMLCNY KYFTINVKPV  60
NLPKSGTIVL FDRKMLRNFR KDGHNWKKKK DGKTVKEAHE HLKVGNEERI HVYYAHGQDN  120
PNFVRRCYWL LDKSMEHIVL VHYREIQEMQ GSPVTPVNSH SSSVSDPPAP WILSEEIDSG  180
TTTAYAGDTS ANINVKSHEL RLHEINTLDW DDLVDANDHN TTTVPNGGTV PYFDLQDQIL  240
LNDSFSNVAN NLSADIPSFG SLTQPIAGSN SVPYNFSSVN LQTMDDQANP HEQRNNTVSL  300
SGVDSLDTLV NDRLQSQNSF GMWVNPIMSD SPCSVDDPAL ESPVSSVHEP YSSLIVDSQQ  360
SSLPGQVFTI TDVSPTCVSS TEKSKVLVTG FFHKDYMHLS KSNLLCVCGD VSVPAEIVQV  420
GVYRCWVSPH SPGFVNLYMS IDGHKPISQV VNFEYRTPAL HDPAVSMEES DNWDEFQLQM  480
RLAYLLFKQL NLDVISTKVS PNRLKEARQF ALKTSFISNS WQYLIKSTED NQIPFSQAKD  540
ALFGIALKSR LKEWLLERIV LGCKTTEYDA HGQSVIHLCA ILGYTWAVSL FSWSGLSLDF  600
RDRSGWTALH WAAYCGREKM VATLLSAGAK PNLVTDPTPQ NPGGCTAADL AYMRGHDGLA  660
AYLSEKSLVQ HFNDMSLAGN ISGSLETSTT DPVISANLTE DQQNLKDTLA AYRTAAEAAS  720
RIHAAFREHS LKLRTKAVAS SHPEAQARKI VAAMKIQHAF RNHKTKKVMA AAARIQCTYR  780
TWKIRKEFLN MRCQAVKIQA AFRCFQVRKH YCKILWSVGV VEKAVLRWRL KRRGFRGLQV  840
KTVEAGTGDQ DQQSDVEEEF FRAGRKQAEE RVERSVVRVQ AMFRSKKAQE EYRRMKLALD  900
QAKLEREFER LLSTEVDMQL KT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.78760.0cotyledon| leaf| seed coat
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G031900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006600367.10.0calmodulin-binding transcription activator 5
SwissprotO234630.0CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBLI1MRP10.0I1MRP1_SOYBN; Uncharacterized protein
STRINGGLYMA17G03510.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42883459
Representative plantOGRP73511116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Ye J, et al.
    Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes.
    Plant Cell, 2009. 21(12): p. 3868-84
    [PMID:20023198]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  3. Lan Y,Liu X,Fu Y,Huang S
    Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips.
    PLoS Genet., 2018. 14(11): p. e1007789
    [PMID:30418966]