PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G031600.1.p
Common NameGLYMA_17G031600, LOC100805532
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 351aa    MW: 39615.7 Da    PI: 5.0328
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G031600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89.1e-171461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +grWT+eEd++l d++++ G g+W++ ++  g+ R++k+c++rw +yl
  Glyma.17G031600.1.p 14 KGRWTAEEDKILTDYIQENGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                         79******************************99************97 PP
2Myb_DNA-binding54.13.6e-1767112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg+ T++E+e++v++++ lG++ W+ Ia +++ gRt++++k++w+++l
  Glyma.17G031600.1.p  67 RGNITPQEEEIIVKLHAVLGNR-WSVIAGHLP-GRTDNEIKNYWNSHL 112
                          7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.558961IPR017930Myb domain
SuperFamilySSF466891.8E-2811108IPR009057Homeodomain-like
SMARTSM007173.4E-121363IPR001005SANT/Myb domain
PfamPF002499.9E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-211568IPR009057Homeodomain-like
CDDcd001674.56E-91661No hitNo description
PROSITE profilePS5129425.57362116IPR017930Myb domain
SMARTSM007172.9E-1666114IPR001005SANT/Myb domain
PfamPF002499.4E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2569116IPR009057Homeodomain-like
CDDcd001671.04E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051555Biological Processflavonol biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGRAPCCEKV GLKKGRWTAE EDKILTDYIQ ENGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRSDVKRGNI TPQEEEIIVK LHAVLGNRWS VIAGHLPGRT DNEIKNYWNS HLRRKIYCFM  120
KSLNESLPPI DMAAVNVAAN SKRRTGGRGT KTQQTIQEDK NVAYNTSQVP QVQPTLKRSA  180
TSQSFINDEE NPTEYSLDGY CENTYGTTAS CLSSMDEVEA LGPYQWLDDE IMKLTHMFEN  240
GVLVNQGGVL TNNEEWLSRN YDCGLMGANN EESKSGVWSS SNAESGEWNT TSCSSVNSVY  300
DYHHHQWPDM QLEGSVDQSY NPWDFCEENQ NEANCFWGTT GHNEGNGFYQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: In seedlings, predominantly expressed in cotyledons. Restricted to the cotyledons and primary leaves. {ECO:0000269|PubMed:17419845}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, cotyledons and young leaves. {ECO:0000269|PubMed:17419845}.
Functional Description ? help Back to Top
Source Description
UniProtFlavonol-specific transcription activator involved in the regulation of several genes of flavonoid biosynthesis. Activates the expression of CHS, CHI, F3H and FLS1. Controls flavonol biosynthesis primarily in cotyledons and leaves (PubMed:17419845, PubMed:20731781). Confers tolerance to UV-B (PubMed:19895401). {ECO:0000269|PubMed:17419845, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:20731781}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00598PBMTransfer from AT5G49330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G031600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Triggered by HY5 in response to light and UV-B. {ECO:0000269|PubMed:19895401}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5737344e-67AB573734.1 Lupinus albus LaMYB11 mRNA for R2R3-MYB transcription factor, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003550551.10.0myb-related protein 308
RefseqXP_028209382.10.0myb-related protein 308-like
SwissprotQ9FJ072e-74MY111_ARATH; Transcription factor MYB111
TrEMBLA0A445G1420.0A0A445G142_GLYSO; Transcription factor MYB111
TrEMBLK7MJQ10.0K7MJQ1_SOYBN; Uncharacterized protein
STRINGGLYMA17G03480.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.18e-76myb domain protein 111
Publications ? help Back to Top
  1. Pandey A,Misra P,Bhambhani S,Bhatia C,Trivedi PK
    Expression of Arabidopsis MYB transcription factor, AtMYB111, in tobacco requires light to modulate flavonol content.
    Sci Rep, 2014. 4: p. 5018
    [PMID:24846090]
  2. Lotkowska ME, et al.
    The Arabidopsis Transcription Factor MYB112 Promotes Anthocyanin Formation during Salinity and under High Light Stress.
    Plant Physiol., 2015. 169(3): p. 1862-80
    [PMID:26378103]
  3. Bulgakov VP,Veremeichik GN,Grigorchuk VP,Rybin VG,Shkryl YN
    The rolB gene activates secondary metabolism in Arabidopsis calli via selective activation of genes encoding MYB and bHLH transcription factors.
    Plant Physiol. Biochem., 2016. 102: p. 70-9
    [PMID:26913794]
  4. Zhou Z,Schenke D,Miao Y,Cai D
    Investigation of the crosstalk between the flg22 and the UV-B-induced flavonol pathway in Arabidopsis thaliana seedlings.
    Plant Cell Environ., 2017. 40(3): p. 453-458
    [PMID:28032363]
  5. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  6. Duan S, et al.
    Functional characterization of a heterologously expressed Brassica napus WRKY41-1 transcription factor in regulating anthocyanin biosynthesis in Arabidopsis thaliana.
    Plant Sci., 2018. 268: p. 47-53
    [PMID:29362083]