PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.17G030900.1.p | ||||||||
Common Name | GLYMA_17G030900, LOC100789636 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 141aa MW: 14425.2 Da PI: 10.2206 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 59.7 | 3.6e-19 | 39 | 72 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C+ CgttkTplWR gp g+k+LCnaCG++ rkk+ Glyma.17G030900.1.p 39 CADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKK 72 ********************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 4.1E-13 | 33 | 84 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.611 | 33 | 69 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.47E-13 | 33 | 73 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 6.2E-16 | 37 | 73 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 4.32E-13 | 38 | 73 | No hit | No description |
Pfam | PF00320 | 5.3E-17 | 39 | 73 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 39 | 64 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 141 aa Download sequence Send to blast |
MVDPTGKGSE VEVEDSNSNP NAPSSGNSPS SNNEQKKTCA DCGTTKTPLW RGGPAGPKSL 60 CNACGIRSRK KKRAILGINK GSTEDGRKGK RTGGGGGIGG IGGGALGREV LLHRSHWKKL 120 GEEEKAAVLL MSLSYGSVYA * |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.59734 | 0.0 | vegetative bud |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00554 | DAP | Transfer from AT5G49300 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.17G030900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT092836 | 1e-136 | BT092836.1 Soybean clone JCVI-FLGm-12I15 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003550526.1 | 3e-96 | GATA transcription factor 16 | ||||
Refseq | XP_028209660.1 | 3e-96 | GATA transcription factor 16-like | ||||
Swissprot | Q9FJ10 | 5e-36 | GAT16_ARATH; GATA transcription factor 16 | ||||
TrEMBL | A0A445G126 | 7e-95 | A0A445G126_GLYSO; GATA transcription factor 16 | ||||
TrEMBL | I1MRN5 | 7e-95 | I1MRN5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G03410.1 | 1e-95 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1569 | 32 | 98 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G06740.1 | 1e-33 | GATA transcription factor 15 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.17G030900.1.p |
Entrez Gene | 100789636 |
Publications ? help Back to Top | |||
---|---|---|---|
|