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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Glyma.17G030600.1.p | ||||||||
| Common Name | GLYMA_17G030600, LOC100781102 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family | ARR-B | ||||||||
| Protein Properties | Length: 678aa MW: 73855.2 Da PI: 6.1466 | ||||||||
| Description | ARR-B family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 90.4 | 1.6e-28 | 213 | 266 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
Glyma.17G030600.1.p 213 KPRVVWSVELHQQFVAAVDQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 266
79*******************.********************************8 PP
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| 2 | Response_reg | 76.3 | 1.1e-25 | 35 | 143 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88
vl+vdD+p+ +++l+++l+ y ev+ + +e al ll+e++ +D+++ D+ mp+mdG++ll++i e +lp+i+++a + ++ + +
Glyma.17G030600.1.p 35 VLVVDDDPTCLMILEKMLRTCLY-EVTKCNRAETALSLLRENKngFDIVISDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADDGKSVVMK 122
89*********************.***************999999**********************6654.8***************** PP
HHHTTESEEEESS--HHHHHH CS
Response_reg 89 alkaGakdflsKpfdpeelvk 109
+ Ga d+l Kp+ +e+l +
Glyma.17G030600.1.p 123 GVTHGACDYLIKPVRIEALKN 143
*****************9986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PIRSF | PIRSF036392 | 6.1E-184 | 13 | 669 | IPR017053 | Response regulator B-type, plant |
| SuperFamily | SSF52172 | 2.28E-35 | 32 | 156 | IPR011006 | CheY-like superfamily |
| Gene3D | G3DSA:3.40.50.2300 | 2.9E-42 | 32 | 174 | No hit | No description |
| SMART | SM00448 | 1.8E-30 | 33 | 145 | IPR001789 | Signal transduction response regulator, receiver domain |
| PROSITE profile | PS50110 | 42.514 | 34 | 149 | IPR001789 | Signal transduction response regulator, receiver domain |
| Pfam | PF00072 | 5.4E-23 | 35 | 143 | IPR001789 | Signal transduction response regulator, receiver domain |
| CDD | cd00156 | 3.42E-27 | 36 | 148 | No hit | No description |
| SuperFamily | SSF46689 | 6.63E-20 | 210 | 270 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS51294 | 11.518 | 210 | 269 | IPR017930 | Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 5.3E-30 | 212 | 271 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 7.3E-25 | 213 | 266 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 2.9E-7 | 215 | 265 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 678 aa Download sequence Send to blast |
MNLSNGKGSM STLTASVVMK SGDAVSDQFP AGLRVLVVDD DPTCLMILEK MLRTCLYEVT 60 KCNRAETALS LLRENKNGFD IVISDVHMPD MDGFKLLEHI GLEMDLPVIM MSADDGKSVV 120 MKGVTHGACD YLIKPVRIEA LKNIWQHVVR KRKNEWKDAE QSGSAEEGDR HPKASDEADY 180 SSSANEGSWR NSKKRRDEEE EAEDRDDTST LKKPRVVWSV ELHQQFVAAV DQLGIDKAVP 240 KKILELMNVP GLTRENVASH LQKYRLYLRR LSGVSQHQNN LNNSFLGPQE ATFGTISSIN 300 GIDLQTLAVA GQLPAQSLAT LQAAGLGRST AKAGVPIPLM DQRNLFSFEN PRLRFGEGQP 360 QHLSTSKPMN LLHGIPTNME PKQLANLHQS TQSIGGLNMR VNASATQGNP ILMQMAQSQP 420 RGQMLSENTG PRVPRLPSSL GQPTVSNGIS NGLLGRNGIA GNNRGPAYNP VPPSSSLLSF 480 PMNQTSEMSV NNSFPIGTTP GISSITTKGS FQEEVTSGIK GSSGFPSYDI FNELHHQKSH 540 DLEITNPGLT YNASHHVNPL QGNIDVAPSV LVHQGFSSTQ QTGQSRDGAL IGKAMFSMGE 600 GLEQNNLQNA NFNPLLVDNS IRIKAERIPD ASSQTNLFPE HYGQEDLMTA LLKQQEGMGP 660 AENEFEFDGY SLDNIPV* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1irz_A | 5e-23 | 212 | 272 | 4 | 64 | ARR10-B |
| Search in ModeBase | ||||||
| Expression -- UniGene ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| UniGene ID | E-value | Expressed in | ||||
| Gma.23636 | 0.0 | cotyledon| flower| leaf| root| seed coat| somatic embryo | ||||
| Expression -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| Uniprot | TISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in pollen. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:15173562, ECO:0000269|PubMed:9891419}. | |||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Glyma.17G030600.1.p |
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_003550512.1 | 0.0 | two-component response regulator ARR2 | ||||
| Refseq | XP_028210241.1 | 0.0 | two-component response regulator ARR2-like | ||||
| Swissprot | Q9ZWJ9 | 0.0 | ARR2_ARATH; Two-component response regulator ARR2 | ||||
| TrEMBL | A0A445G103 | 0.0 | A0A445G103_GLYSO; Two-component response regulator | ||||
| TrEMBL | I1MRN2 | 0.0 | I1MRN2_SOYBN; Two-component response regulator | ||||
| STRING | GLYMA17G03380.1 | 0.0 | (Glycine max) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF3958 | 34 | 58 | Representative plant | OGRP292 | 17 | 120 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G16110.1 | 0.0 | response regulator 2 | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Glyma.17G030600.1.p |
| Entrez Gene | 100781102 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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