PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G024400.2.p
Common NameGLYMA_17G024400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 386aa    MW: 40114.3 Da    PI: 9.0495
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G024400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.71.1e-09121727
                         SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  7 rffartGtCkyGdrCkFaHgp 27
                         ++f+rtG Ck+G +Ck++H++
  Glyma.17G024400.2.p  1 MYFMRTGLCKFGVSCKYHHPR 21
                         59*****************96 PP
2zf-CCCH36.11.1e-114467427
                         ---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                         ++C+++ +tG+Ck+G++CkF+H++
  Glyma.17G024400.2.p 44 KECSYYVKTGQCKFGATCKFHHPQ 67
                         68********************97 PP
3zf-CCCH36.67.8e-12208233227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++C+++++tG+Ck+G +C+++H+p
  Glyma.17G024400.2.p 208 DQPECHHYMKTGECKFGLSCRYHHPP 233
                          689*********************97 PP
4zf-CCCH31.13.9e-10255279327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                           ++C ++ + G Ck+G+ CkF H++
  Glyma.17G024400.2.p 255 APPCTHYTQRGVCKFGSACKFDHPM 279
                          689********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.629122IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-7121IPR000571Zinc finger, CCCH-type
SMARTSM003563.2121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.074068IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-64168IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-54267IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-94467IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-44666IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.666206234IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-4206233IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-9208233IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5209235IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.69252280IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5252279IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-7255279IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-6256282IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-5257277IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MYFMRTGLCK FGVSCKYHHP RQAAGTATPV PLNYYGYPLR VAEKECSYYV KTGQCKFGAT  60
CKFHHPQPAG VQALAPSPVP PVSPLPVPVP SPMYPTVQIP SGPSQQQYGV LVARPPMLPG  120
SVVQGPYGPM VVSPAMVPFS GWSPYQAPAT NPVLPSSNTS NAGSTQFYGI SQLPSSPATF  180
TGPYQPSGSS IGPSGASQKE HPFPERPDQP ECHHYMKTGE CKFGLSCRYH HPPDKSAPKA  240
TVTLSPVGLP LRPGAPPCTH YTQRGVCKFG SACKFDHPMG SLSYSPSASS LADMPVAPYP  300
VGSSIGTLAP SSSSSELRPE LGAGSNKESV ASRMSSMSTS TGSVGMTLSS VGPISHSSTQ  360
PSAQSSSSPA TTSATTSSTV SHTSS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.331480.0flower| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G024400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-164AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003550189.10.0zinc finger CCCH domain-containing protein 58
RefseqXP_028211017.10.0zinc finger CCCH domain-containing protein 58-like
SwissprotQ84W911e-111C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A0R0F7A80.0A0A0R0F7A8_SOYBN; Uncharacterized protein
STRINGGLYMA17G02720.30.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-100C3H family protein