PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.17G011400.1.p | ||||||||
Common Name | GLYMA_17G011400, LOC100784668 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 490aa MW: 52521.6 Da PI: 7.5834 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.9 | 1.4e-30 | 239 | 297 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ Glyma.17G011400.1.p 239 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILTTTYEGTHNHP 297 7*********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.4E-33 | 223 | 299 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.15E-27 | 231 | 299 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.977 | 233 | 299 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.3E-36 | 238 | 298 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-26 | 240 | 297 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 490 aa Download sequence Send to blast |
MFPALGFPVN LSPSDPNHRT VLAEVDFLSA RNNSSPHTND HGTPPKSYPH VNTGLQLLTA 60 NAGSDQSTVD DGASSDAEDK RAKMTELARL KEDLRNMNAE NQKLKEMLSH VSSNYANLQM 120 HLAAVLQQQQ NQRTESTEQE VVQGKLAEER KHGVGGGTVP RQFLSLVPSE IDDQVSNSSS 180 GERTRSTTPP SNKNDKDNKE TDDKLNPSNP TTDPSTSPEA AMRKARVSVR ARSEAPMISD 240 GCQWRKYGQK MAKGNPCPRA YYRCTMAVGC PVRKQVQRCA EDRTILTTTY EGTHNHPLPP 300 AAMAMASTTV AATSMLLSGS MSSADGKMNP NLLTGAILPC SNMATLSASA PFPTVTLDLT 360 HNPNALQQYQ LRPQTQTPFL PSPPQNFMSG PTTPQLPKLI AQVLYNQSKF SGLQLSQDVG 420 PNNSQAPTPS LLQPSQQVSL TDTVSAITAD PNFPAALTAA ISSIIGGANP NNNNNSSNPN 480 VINSATINQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 6e-21 | 225 | 301 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.22513 | 0.0 | flower| hypocotyl| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Roots, leaves, shoots, flowers and siliques. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.17G011400.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU019573 | 0.0 | EU019573.1 Glycine max WRKY34 (WRKY34) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003549709.1 | 0.0 | WRKY transcription factor 6 | ||||
Swissprot | Q9C519 | 1e-136 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | K7MJD8 | 0.0 | K7MJD8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G01490.3 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF866 | 34 | 121 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-118 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.17G011400.1.p |
Entrez Gene | 100784668 |