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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.17G007600.1.p |
| Common Name | GLYMA_17G007600, LOC100776109 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
GRAS |
| Protein Properties |
Length: 546aa MW: 60855.4 Da PI: 6.5015 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.17G007600.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 409.1 | 4.3e-125 | 177 | 545 | 4 | 374 |
GRAS 4 lLlecAeavssgdlelaqalLar.lselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92
+L cA+avs++d a+ + + l +l+s +gdp+qRl ay++e+L+arl +s++ +yk+l++++ + s+e +++++++++++P+ k
Glyma.17G007600.1.p 177 ALKVCAQAVSDDDVPTARGWIDNvLGKLVSVSGDPIQRLGAYLLEGLRARLESSGNLIYKSLKCEQPT---SKELMSYMHILYQICPYWK 263
6888**************9997527888***************************************9...99999************** PP
GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
f+++ aN I e +++e+r+HiiDf+i qG+QW L+qaLa Rp+gppslR+Tgv++++s+ + l +gerL++fA+++gvpfef+
Glyma.17G007600.1.p 264 FAYISANAVIQETMANESRIHIIDFQIAQGTQWHLLIQALAHRPGGPPSLRVTGVDDSQSThaRGGGLWIVGERLSDFARSCGVPFEFHS 353
*********************************************************9988888999*********************** PP
GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
+a + ++ +++++ gEalaVn+ + lh+++desvs+e++rd++L+lvkslsPkvv++veqe+++n+++F++rf+e+l+yy+a+f+s
Glyma.17G007600.1.p 354 -AAISGCEVVRGNIEIRAGEALAVNFPYVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTFVEQESNTNTSPFFQRFVETLDYYTAMFES 442
.56666777799****************************************************************************** PP
GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360
+++ pr++++ri+ E+++++r+ vn++aceg er+erhe ++kWr+rl++aGFk+ +ls++++ + ll++++++ yr+e+++g+l+l
Glyma.17G007600.1.p 443 IDVACPRDDKKRISAEQHCVARDMVNMIACEGVERVERHELFGKWRSRLSMAGFKQCQLSSSVMVATQNLLKEFSQN-YRLEHRDGALYL 531
***************************************************************************66.************ PP
GRAS 361 gWkdrpLvsvSaWr 374
gW++r + + SaWr
Glyma.17G007600.1.p 532 GWMNRHMATSSAWR 545
*************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 546 aa
Download sequence Send
to blast |
MQTSQKHPSS AGAHFYHQPV QGIYQMLQSN LCQDSSSQGT SVSFETCKEQ YFTLESCPAP 60
TNDFMDCDDS PSYASVSSKR TPFSPQGSQS CYSDHHQSSD NTYGSPISGL SSVDDRHQLK 120
HKLRELEISL LAPEESDITD SCGCCVVKGG LHGSSQLAKH NWDQIAENIA QFDLKGALKV 180
CAQAVSDDDV PTARGWIDNV LGKLVSVSGD PIQRLGAYLL EGLRARLESS GNLIYKSLKC 240
EQPTSKELMS YMHILYQICP YWKFAYISAN AVIQETMANE SRIHIIDFQI AQGTQWHLLI 300
QALAHRPGGP PSLRVTGVDD SQSTHARGGG LWIVGERLSD FARSCGVPFE FHSAAISGCE 360
VVRGNIEIRA GEALAVNFPY VLHHMPDESV STENHRDRLL RLVKSLSPKV VTFVEQESNT 420
NTSPFFQRFV ETLDYYTAMF ESIDVACPRD DKKRISAEQH CVARDMVNMI ACEGVERVER 480
HELFGKWRSR LSMAGFKQCQ LSSSVMVATQ NLLKEFSQNY RLEHRDGALY LGWMNRHMAT 540
SSAWR*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: During development, higher expression levels are detected in young rosette leaves, senescing leaves and petals and sepals at flower stage 15. {ECO:0000269|PubMed:16680434}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, hypocotyls, cotyledons, shoot apex, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:16680434, ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |
