PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.17G002800.1.p | ||||||||
Common Name | GLYMA_17G002800, LOC100792622 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 404aa MW: 45803.4 Da PI: 7.012 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 160.3 | 7.6e-50 | 47 | 172 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+ Glyma.17G002800.1.p 47 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRM 135 79***************************.89***************8778899************************************ PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++ + +glkktLvfy+g+apkg +t+W+m+eyrl Glyma.17G002800.1.p 136 IRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 172 ***********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.66E-55 | 46 | 192 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.804 | 46 | 193 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.0E-25 | 48 | 172 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MAIAAANSSP TMSLSHSQSQ EDATTASTTN KPVDVDDNDD HEHDMVMPGF RFHPTEEELV 60 EFYLRRKVEG KRFNVELITF LDLYRYDPWE LPALAAIGEK EWYFYVPRDR KYRNGDRPNR 120 VTTSGYWKAT GADRMIRTEN FRSIGLKKTL VFYSGKAPKG IRTSWIMNEY RLPQHETERY 180 QKAEISLCRV YKRAGVEDHP SLPRCLPTRP SSSRASHDNN KKHNEMVQHN INMGFVGQLK 240 PPTTEHIVDK INETEASSDV NTALGLSKYN AAYRAAMGAL STTMALPVVP MDHEEGLMMM 300 QQQSKQAAAH VPTIFSAGPS SSNNSGVVNM DDLNRLMSYQ QQYYNVQSQS HPNQFSTLLM 360 QPSAVVSLSS LPNPLPPTFS DRLWDWNPIP EPPNQEYSNM SFK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-55 | 48 | 193 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-55 | 48 | 193 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-55 | 48 | 193 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-55 | 48 | 193 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-55 | 48 | 193 | 19 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-55 | 48 | 193 | 19 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.7870 | 0.0 | leaf |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00257 | DAP | Transfer from AT2G02450 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.17G002800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-150 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003550460.1 | 0.0 | NAC domain-containing protein 35 | ||||
Refseq | XP_028209593.1 | 0.0 | NAC domain-containing protein 35-like | ||||
TrEMBL | A0A445FZS3 | 0.0 | A0A445FZS3_GLYSO; NAC domain-containing protein 35 isoform A | ||||
TrEMBL | A0A445FZS9 | 0.0 | A0A445FZS9_GLYSO; NAC domain-containing protein 35 isoform B | ||||
TrEMBL | K7MJ70 | 0.0 | K7MJ70_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA17G00650.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7203 | 31 | 46 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.2 | 1e-111 | NAC domain containing protein 35 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.17G002800.1.p |
Entrez Gene | 100792622 |