PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G219800.1.p
Common NameGLYMA_16G219800, LOC102670495
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 266aa    MW: 30542.9 Da    PI: 6.0501
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G219800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY73.62.5e-23105164359
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          Dg++WrKYGqKe+ +++++r+YYrCt++   +C++ k+v+r +edp + ++tY g+H+++
  Glyma.16G219800.1.p 105 DGHQWRKYGQKEILNAKYSRNYYRCTHKydqNCQAIKQVQRIQEDPPLYKTTYLGHHTCN 164
                          9**************************9999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.0E-2488164IPR003657WRKY domain
SuperFamilySSF1182903.92E-23101164IPR003657WRKY domain
SMARTSM007744.1E-33103165IPR003657WRKY domain
PfamPF031062.3E-23105163IPR003657WRKY domain
PROSITE profilePS5081117.89105161IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MDDRKVLEEL VKGREFANQL RQVMINGKDN DSPFVRSLAK NVLRSFTNTL FLLDKYPSYE  60
VSPSTKSEDS QESCKSFNSK NKRGCYKRKR NTQEREEVSQ TPKLDGHQWR KYGQKEILNA  120
KYSRNYYRCT HKYDQNCQAI KQVQRIQEDP PLYKTTYLGH HTCNDFLNSA IILDSNNDPS  180
DTSILLSFNN TFPTPTKQEC PFLSSFPSPS SGKKEEVIPS SSPPETSLDD SSRHNNVTLP  240
PPDFWDVMFD SVDLDDVNLL LDCDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-211051631068OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G219800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0956450.0BT095645.1 Soybean clone JCVI-FLGm-15G11 unknown mRNA.
GenBankKT0312290.0KT031229.1 Glycine max clone HN_CCL_115 WRKY transcription factor (Glyma03g00460.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006599732.10.0probable WRKY transcription factor 70
RefseqXP_028207084.10.0probable WRKY transcription factor 70
TrEMBLA0A445GLR40.0A0A445GLR4_GLYSO; Putative WRKY transcription factor 70
TrEMBLK7MJ240.0K7MJ24_SOYBN; Uncharacterized protein
STRINGGLYMA16G34590.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19953486
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.13e-37WRKY DNA-binding protein 70