PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.16G218900.1.p | ||||||||
Common Name | GLYMA_16G218900, LOC100785170 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 235aa MW: 27129.2 Da PI: 8.0268 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.9 | 1.9e-17 | 4 | 49 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+ +G+++W++Ia+++ gR++k+c++rw++ Glyma.16G218900.1.p 4 RGHWRPAEDEKLRELVEHYGPHNWNAIAEKLR-GRSGKSCRLRWFNQ 49 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 58.2 | 1.8e-18 | 56 | 100 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T+eE+e+l+ ++ +G++ W+ Iar+++ gRt++ +k++w+ Glyma.16G218900.1.p 56 RNPFTEEEEERLLASHRIHGNR-WAVIARHFP-GRTDNAVKNHWHVM 100 789*******************.*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.644 | 1 | 54 | IPR017930 | Myb domain |
SMART | SM00717 | 4.2E-15 | 3 | 52 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.33E-29 | 4 | 97 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.3E-17 | 4 | 49 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.6E-27 | 5 | 57 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.28E-14 | 7 | 48 | No hit | No description |
PROSITE profile | PS51294 | 20.129 | 55 | 105 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-16 | 55 | 103 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-15 | 56 | 99 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.76E-13 | 58 | 101 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-21 | 58 | 103 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MCSRGHWRPA EDEKLRELVE HYGPHNWNAI AEKLRGRSGK SCRLRWFNQL DPRINRNPFT 60 EEEEERLLAS HRIHGNRWAV IARHFPGRTD NAVKNHWHVM MARIRRERSK INNPKLQPLF 120 APNLKDDLEA IPSFVEKYYE KYSHPCVTLT HSSFQFPGKK FYFQDPSSAG STVPPGKSQS 180 VEFYDFLQVN TDSNESEVTD NARRDDEEVS QDAVGQKNKD NGVPFIDFLS TGGC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-31 | 4 | 103 | 7 | 106 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.52526 | 0.0 | flower |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in stamen (PubMed:19325888). Present in roots and siliques, and, at low levels, in leaves and flowers (PubMed:21399993). Expressed in stems, especially in fibers and, at lower levels, in xylems (PubMed:18952777, PubMed:21399993). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:19325888, ECO:0000269|PubMed:21399993}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:23781226}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00145 | DAP | Transfer from AT1G17950 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.16G218900.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19674407, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:22197883}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT092893 | 0.0 | BT092893.1 Soybean clone JCVI-FLGm-12J9 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003548323.1 | 1e-177 | transcription factor MYB52 | ||||
Refseq | XP_028206639.1 | 1e-177 | transcription factor MYB52-like | ||||
Swissprot | Q6R0C4 | 1e-84 | MYB52_ARATH; Transcription factor MYB52 | ||||
TrEMBL | A0A445GLL1 | 1e-176 | A0A445GLL1_GLYSO; Transcription factor MYB52 | ||||
TrEMBL | I1MQM9 | 1e-176 | I1MQM9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA16G34490.1 | 1e-177 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF230 | 34 | 243 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17950.1 | 4e-87 | myb domain protein 52 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.16G218900.1.p |
Entrez Gene | 100785170 |
Publications ? help Back to Top | |||
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