PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G218900.1.p
Common NameGLYMA_16G218900, LOC100785170
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 235aa    MW: 27129.2 Da    PI: 8.0268
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G218900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.91.9e-17449147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         rg W + Ede+l ++v+ +G+++W++Ia+++  gR++k+c++rw++ 
  Glyma.16G218900.1.p  4 RGHWRPAEDEKLRELVEHYGPHNWNAIAEKLR-GRSGKSCRLRWFNQ 49
                         899*****************************.***********996 PP
2Myb_DNA-binding58.21.8e-1856100147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          r+++T+eE+e+l+  ++ +G++ W+ Iar+++ gRt++ +k++w+  
  Glyma.16G218900.1.p  56 RNPFTEEEEERLLASHRIHGNR-WAVIARHFP-GRTDNAVKNHWHVM 100
                          789*******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.644154IPR017930Myb domain
SMARTSM007174.2E-15352IPR001005SANT/Myb domain
SuperFamilySSF466891.33E-29497IPR009057Homeodomain-like
PfamPF002494.3E-17449IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-27557IPR009057Homeodomain-like
CDDcd001675.28E-14748No hitNo description
PROSITE profilePS5129420.12955105IPR017930Myb domain
SMARTSM007171.1E-1655103IPR001005SANT/Myb domain
PfamPF002492.0E-155699IPR001005SANT/Myb domain
CDDcd001676.76E-1358101No hitNo description
Gene3DG3DSA:1.10.10.602.4E-2158103IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MCSRGHWRPA EDEKLRELVE HYGPHNWNAI AEKLRGRSGK SCRLRWFNQL DPRINRNPFT  60
EEEEERLLAS HRIHGNRWAV IARHFPGRTD NAVKNHWHVM MARIRRERSK INNPKLQPLF  120
APNLKDDLEA IPSFVEKYYE KYSHPCVTLT HSSFQFPGKK FYFQDPSSAG STVPPGKSQS  180
VEFYDFLQVN TDSNESEVTD NARRDDEEVS QDAVGQKNKD NGVPFIDFLS TGGC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-3141037106B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.525260.0flower
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stamen (PubMed:19325888). Present in roots and siliques, and, at low levels, in leaves and flowers (PubMed:21399993). Expressed in stems, especially in fibers and, at lower levels, in xylems (PubMed:18952777, PubMed:21399993). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:19325888, ECO:0000269|PubMed:21399993}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:23781226}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00145DAPTransfer from AT1G17950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G218900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19674407, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:22197883}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0928930.0BT092893.1 Soybean clone JCVI-FLGm-12J9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003548323.11e-177transcription factor MYB52
RefseqXP_028206639.11e-177transcription factor MYB52-like
SwissprotQ6R0C41e-84MYB52_ARATH; Transcription factor MYB52
TrEMBLA0A445GLL11e-176A0A445GLL1_GLYSO; Transcription factor MYB52
TrEMBLI1MQM91e-176I1MQM9_SOYBN; Uncharacterized protein
STRINGGLYMA16G34490.11e-177(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.14e-87myb domain protein 52
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]
  3. Shi D, et al.
    MYB52 Negatively Regulates Pectin Demethylesterification in Seed Coat Mucilage.
    Plant Physiol., 2018. 176(4): p. 2737-2749
    [PMID:29440562]