PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.16G217800.1.p | ||||||||
Common Name | GLYMA_16G217800, LOC100785023 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 719aa MW: 79149 Da PI: 6.7541 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.5 | 6.5e-20 | 25 | 80 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q+++Le++F+++++p++++r +L+++lgL rq+k+WFqNrR+++k Glyma.16G217800.1.p 25 KKRYHRHTANQIQRLESMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMK 80 678899***********************************************998 PP | |||||||
2 | START | 174.3 | 7.8e-55 | 225 | 448 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS START 2 laeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....k 78 +a a++e +++ + +ep+W+k + + ++ d + + f+++++ ++ea+r+sgvv+m+ +lv ++d + +W e + Glyma.16G217800.1.p 225 IASNAMEEMIRLLQTNEPLWMKGAdgrDVLDLDSYERMFPKANShlknpnVHVEASRDSGVVIMNGLTLVDMFMDPN-KWMELFStivtM 313 67889*******************999889999999999998889999999**************************.88888877777* PP EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE CS START 79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh 161 a t+evissg g lqlm+ elq+lsplv+ R+f+f+Ry++q ++g w+ivdvS d +q+++ ++ R+++lpSg i++++ng+ Glyma.16G217800.1.p 314 ARTIEVISSGmmgghgGSLQLMYEELQVLSPLVStREFYFLRYCQQIEQGLWAIVDVSYDFTQDNQ-FAPQFRSHRLPSGVFIQDMPNGY 402 *****************************************************************9.8********************** PP EEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 162 skvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 skvtw+ehv+ ++++p h l+r ++ sg+a+ga++w+ tlqr ce+ Glyma.16G217800.1.p 403 SKVTWIEHVEIEDKTPvHRLYRNIIYSGIAFGAQRWLTTLQRMCER 448 ********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.84E-20 | 6 | 82 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.8E-22 | 11 | 76 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.074 | 22 | 82 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.9E-19 | 23 | 86 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.60E-19 | 24 | 83 | No hit | No description |
Pfam | PF00046 | 1.5E-17 | 25 | 80 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 57 | 80 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 50.332 | 215 | 451 | IPR002913 | START domain |
SuperFamily | SSF55961 | 7.33E-36 | 216 | 449 | No hit | No description |
CDD | cd08875 | 1.77E-109 | 219 | 447 | No hit | No description |
SMART | SM00234 | 4.6E-42 | 224 | 448 | IPR002913 | START domain |
Pfam | PF01852 | 5.2E-47 | 225 | 448 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 9.0E-9 | 272 | 445 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.14E-25 | 469 | 710 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 719 aa Download sequence Send to blast |
MEFGSGSPGD RHHHHDGSSD SQRRKKRYHR HTANQIQRLE SMFKECPHPD EKQRLQLSRE 60 LGLAPRQIKF WFQNRRTQMK AQHERADNCA LRAENDKIRC ENIAIREALK NVICPSCGGP 120 PMNDDCYFDE QKLRLENAQL KEELDRVSSI AAKYIGRPIS QLPPVQPIHI SSLDLSMGTF 180 ASQGLGGPSL DLDLLPGSSS SSMPNVPPFQ PPCLSDMDKS LMSDIASNAM EEMIRLLQTN 240 EPLWMKGADG RDVLDLDSYE RMFPKANSHL KNPNVHVEAS RDSGVVIMNG LTLVDMFMDP 300 NKWMELFSTI VTMARTIEVI SSGMMGGHGG SLQLMYEELQ VLSPLVSTRE FYFLRYCQQI 360 EQGLWAIVDV SYDFTQDNQF APQFRSHRLP SGVFIQDMPN GYSKVTWIEH VEIEDKTPVH 420 RLYRNIIYSG IAFGAQRWLT TLQRMCERIA CLLVTGNSTR DLGGVIPSPE GKRSMMKLAQ 480 RMVTNFCASI SSSAGHRWTT LSGSGMNEVG VRVTVHKSSD PGQPNGVVLS AATTIWLPIP 540 PQTVFNFFKD EKKRPQWDVL SNGNAVQEVA HIANGSHPGN CISVLRAFNS SQNNMLILQE 600 SCVDSSGSLV VYCPVDLPAI NIAMSGEDPS YIPLLPSGFT ISPDGQADQD GGGASTSTSS 660 RVMGGGSGSG GSLITVAFQI LVSSLPSAKL NMESVTTVNS LIGNTVQHIK AALNCPSS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.42339 | 0.0 | cotyledon |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During embryo development, expressed in all cells at the 4- and 16-cell embryo stages. Expression is restricted to the protoderm from the globular stage onward. {ECO:0000269|PubMed:25564655}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in apical meristems and young epidermal tissue including trichomes and stipules. Expressed in lateral root tips, the L1 layer of apical inflorescence meristems and early flower primordia, carpel and petal epidermis, stigma papillae, ovule primordia, nucellus and embryo. {ECO:0000269|PubMed:16778018}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.16G217800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003549189.1 | 0.0 | homeobox-leucine zipper protein HDG11 | ||||
Refseq | XP_014624636.1 | 0.0 | homeobox-leucine zipper protein HDG11 | ||||
Refseq | XP_028206078.1 | 0.0 | homeobox-leucine zipper protein HDG11-like | ||||
Refseq | XP_028206079.1 | 0.0 | homeobox-leucine zipper protein HDG11-like | ||||
Swissprot | Q9FX31 | 0.0 | HDG11_ARATH; Homeobox-leucine zipper protein HDG11 | ||||
TrEMBL | A0A445GLM0 | 0.0 | A0A445GLM0_GLYSO; Homeobox-leucine zipper protein HDG11 isoform A | ||||
TrEMBL | I1MQL8 | 0.0 | I1MQL8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA16G34350.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1026 | 33 | 98 | Representative plant | OGRP145 | 15 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.16G217800.1.p |
Entrez Gene | 100785023 |