PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G217400.1.p
Common NameGLYMA_16G217400, LOC100784495
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 265aa    MW: 30698.6 Da    PI: 6.3007
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G217400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.76.4e-55331601128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lppGfrFhPtdeelv++yLk+k++g+++el ++i+evd+yk+ePw+L  k  + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgk
  Glyma.16G217400.1.p  33 LPPGFRFHPTDEELVNYYLKRKINGQEIEL-DIIPEVDLYKCEPWELAeKsFLPSRDPEWYFFGPRDRKYPNGYRTNRATRAGYWKSTGK 121
                          79****************************.99**************84335556888******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d++v + +++ +g+kktLv+y+grap+g +tdWvmheyrl
  Glyma.16G217400.1.p 122 DRRVSC-QSRPIGMKKTLVYYRGRAPQGIRTDWVMHEYRL 160
                          ******.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.94E-6428183IPR003441NAC domain
PROSITE profilePS5100559.76533183IPR003441NAC domain
PfamPF023655.0E-3034160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MMVVMSENTF FRRSCNKKRK KGRREKKMSP VGLPPGFRFH PTDEELVNYY LKRKINGQEI  60
ELDIIPEVDL YKCEPWELAE KSFLPSRDPE WYFFGPRDRK YPNGYRTNRA TRAGYWKSTG  120
KDRRVSCQSR PIGMKKTLVY YRGRAPQGIR TDWVMHEYRL DDKECEDTTG LQDTYALCRV  180
FKKNGICSDI EEQGQCSISL IESSQTITNE CETMSPDIPG ASSSCLEEED KDDSWMQFIT  240
EDAWYSSNAA MVGGEEVSHV TFTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-55231834168Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11620KKRKK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in a few sieve element cells before enucleation and in phloem-pole pericycle cells. {ECO:0000269|PubMed:25081480}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G217400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-127AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003549188.20.0NAC domain-containing protein 86
RefseqXP_028206770.10.0NAC domain-containing protein 86-like
SwissprotQ9FFI56e-90NAC86_ARATH; NAC domain-containing protein 86
TrEMBLA0A445GLK90.0A0A445GLK9_GLYSO; NAC domain-containing protein 86
TrEMBLK7MJ050.0K7MJ05_SOYBN; Uncharacterized protein
STRINGGLYMA16G34310.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95643343
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.11e-133NAC domain containing protein 57
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]