PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G201100.1.p
Common NameGLYMA_16G201100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 968aa    MW: 108343 Da    PI: 7.9038
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G201100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix29.51.9e-092332892076
             trihelix  20 rlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 
                           + r+k ++ + +ev+++++++g++r +k+   kw+n+ ++++k+ e+e++++ e+ 
  Glyma.16G201100.1.p 233 GITRAKTRADKDKEVAEFLKRHGVNRDAKTAGTKWDNMLGEFRKVYEWERGGEREQI 289
                          445788999999**************************************9965544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF561129.54E-9866954IPR011009Protein kinase-like domain
CDDcd001801.57E-7869947No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 968 aa     Download sequence    Send to blast
MGDKGDTTKK QQSQQQQPQS HHHHQQQQQT QQQISSSPKA PHEEPITEVR PIHHHHHQQL  60
SPVVVATGAP PFIPSPLYVS SGASSSPFEP QFETLNPKRP RYSGQWKQLL PSPPAQQKQS  120
QMAMLPTSES SPSPTTHTSS NPLQQQQPQT QTASSSDTSS SPTHSLPLLS GEGTKQEGEQ  180
IHQQLRKGKY VSPVWKPNEM LWLARAWKEQ YKGGGGVGGS DFSSRAEQQA ELGITRAKTR  240
ADKDKEVAEF LKRHGVNRDA KTAGTKWDNM LGEFRKVYEW ERGGEREQIG KSYFRLSPYE  300
RKLHRLPASF DEDVFEELAQ FMGSRMRSSH GRAVSSLGSG DEARTALAAT RALPPPPRPF  360
KDDEIPLSAR TKQLALTSGG EPFFHGSRGG LLGLDTLLDV TGSSSSSSKE LRRIGKIRMS  420
WEESVSLWAE EGEVHRGRVK LQSSSFLNAD ELTCFDDAMV PCPMEYFEDG PLKGFSVDRF  480
VSGQQVKVFG RRKSSPASDS SSAGFAERVQ FPSKALPIRS IATLDFRDPS DYYMECFLRA  540
SPQTLPSLLE LKRHLQEPPP EDLRFPLRRD VYEDLPQGKE LFFTTTSEPL DCRAIMFEIV  600
GPIIRPSLNP TSSSRDSFIP LWDDCINRVI QKFCPENLTL IRKPTSSPPP TATTAAATAT  660
ESTNLLLQDQ WPNITGFVNN YCLWRGEETH QLTETQPNPS TTLVAKLLWT YMDLPYILGY  720
YAVANTVTFC AMSRSQEGII NRTDLLELNL TTPTERLKAL VPCFRIGLLL PLLSKRCSSI  780
ISNSKGFAYS DFERVCYGNG VVTEVTPNTC TRMFSEKRKW MAVKEVYEIL DHRIPHAEVL  840
VGVSERELGL SFKPRGCRVR PGNCEELVEA LKYVTKALVA LHDLSFMHRD LKWEKVMRRM  900
DSREEEWFVC GTCGLGGVPK MLRELQSRCM EQNPEQRPTA ADCYHHLLQL QSSLSAATAA  960
AGGGIMM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G201100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006599639.10.0uncharacterized protein LOC100793127
TrEMBLK7MIP00.0K7MIP0_SOYBN; Uncharacterized protein
STRINGGLYMA16G32580.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118572831
Representative plantOGRP947967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-07Trihelix family protein