PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.16G199000.1.p | ||||||||
Common Name | GLYMA_16G199000, LOC100819565 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 232aa MW: 26248.6 Da PI: 7.5953 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.7 | 1.2e-17 | 63 | 113 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ + +Wv+e+r+p +k++r++lg+f t+e+Aa+a++ a+ +l+g Glyma.16G199000.1.p 63 PVYRGVRRRN-TDKWVSEVREP---NKKTRIWLGTFPTPEMAARAHDVAAMALRG 113 68*****887.9******9998...347*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.1E-13 | 63 | 113 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.733 | 64 | 121 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-30 | 64 | 123 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.53E-21 | 64 | 123 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.4E-28 | 64 | 127 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.3E-8 | 65 | 76 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.16E-28 | 65 | 123 | No hit | No description |
PRINTS | PR00367 | 6.3E-8 | 87 | 103 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MYTLNHSSYL YHVSPELSSS LDSSSPASEG SRGVAFSDEE VRLAVRHPKK RAGRKKFRET 60 RHPVYRGVRR RNTDKWVSEV REPNKKTRIW LGTFPTPEMA ARAHDVAAMA LRGRYACLNF 120 ADSTWRLPIP ATANAKDIQK AAAEAAEAFR PSQTLENTNT KQECVKVVTT TTITEQKRGM 180 FYTEEEEQVL DMPELLRNMV LMSPTHCIGY EYEDADLDAQ DAEVSLWSFS I* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.19400 | 0.0 | flower| hypocotyl| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.16G199000.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM165475 | 0.0 | HM165475.1 Glycine max cultivar Williams C-repeat/dehydration-responsive element-binding factor CBF1-2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001267504.1 | 1e-174 | AP2-lke DNA-binding domain-containing protein | ||||
Refseq | XP_028206609.1 | 1e-174 | dehydration-responsive element-binding protein 1A-like | ||||
Swissprot | Q9FJ93 | 2e-66 | DRE1D_ARATH; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | A0A445GKS8 | 1e-173 | A0A445GKS8_GLYSO; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | I1MQ27 | 1e-173 | I1MQ27_SOYBN; C-repeat/dehydration-responsive element-binding factor CBF1-2 | ||||
STRING | GLYMA16G32330.1 | 1e-174 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 3e-50 | C-repeat-binding factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.16G199000.1.p |
Entrez Gene | 100819565 |
Publications ? help Back to Top | |||
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