PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G196700.2.p
Common NameGLYMA_16G196700, LOC100784656
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 743aa    MW: 81030.1 Da    PI: 5.6417
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G196700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.96.1e-2256111156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          ++k +++t++q++eLe++F+++++p++++r++L+k+lgL+ +qVk+WFqNrR+++k
  Glyma.16G196700.2.p  56 KKKYHRHTPQQIQELEAFFKECPHPDEKQRTDLSKRLGLENKQVKFWFQNRRTQMK 111
                          79999************************************************999 PP
2START176.81.3e-552684912205
                          HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS
                START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla.... 77 
                          la++a++el+k+a+ +  +W kss    e +n de+ + f++  +      + +ea r +gvv + +  lve+l+d   qW+e++     
  Glyma.16G196700.2.p 268 LALSAMNELIKMAQPDTSLWIKSSdgrnEVLNHDEYARLFSPYIGskpaagYVTEATRGTGVVSASSLGLVEILMDAD-QWSEMFSsmia 356
                          6899********************9999999**********99999********************************.*********** PP

                          EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTC CS
                START  78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksng 160
                          +a+t+ev+ssg      galq+m ae q+lsplvp R + f+R+++++ +g w++vdvSvd  +++++s++++ +++lpSg++i++++ng
  Glyma.16G196700.2.p 357 SAATVEVLSSGtggtrsGALQVMLAEVQLLSPLVPaRQVSFLRFCKKHAEGLWAVVDVSVDIGRNVTNSHPLMSCRRLPSGCVIQDMPNG 446
                          ****************************************************************************************** PP

                          EEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                START 161 hskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                           s++twveh  ++++++h+l+r+lv+sg+ +ga++w atl rqc 
  Glyma.16G196700.2.p 447 FSNITWVEHSQYDESVIHQLYRPLVSSGIGFGAQRWIATLLRQCD 491
                          ******************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.27E-2136113IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-2341107IPR009057Homeodomain-like
PROSITE profilePS5007117.96153113IPR001356Homeobox domain
SMARTSM003892.5E-1955117IPR001356Homeobox domain
PfamPF000461.8E-1956111IPR001356Homeobox domain
CDDcd000864.17E-1860113No hitNo description
PROSITE patternPS00027088111IPR017970Homeobox, conserved site
PROSITE profilePS5084843.495258495IPR002913START domain
SuperFamilySSF559611.07E-31260492No hitNo description
CDDcd088751.57E-107262490No hitNo description
SMARTSM002342.0E-39267492IPR002913START domain
PfamPF018524.4E-47268491IPR002913START domain
SuperFamilySSF559615.63E-17510714No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    Send to blast
MEGHSEMGLM GESFDTSNLL GRMRDDEYES RSGSDNFDGG SGDDQDAGDD QPHKKKKKYH  60
RHTPQQIQEL EAFFKECPHP DEKQRTDLSK RLGLENKQVK FWFQNRRTQM KTQLERHENM  120
ILRQENDKLR AENSVMKDAL ANPICNNCGG PAIPGQISLE EHQTRMENAR LKDELNRICA  180
LANKFLGRPL SPLASPMALP PSNSGLELAI GRNGLGGSSN FGMPLPMGFD VGDGALGSSP  240
AMSTMGARSP MGMMGNEIQL ERSMLLDLAL SAMNELIKMA QPDTSLWIKS SDGRNEVLNH  300
DEYARLFSPY IGSKPAAGYV TEATRGTGVV SASSLGLVEI LMDADQWSEM FSSMIASAAT  360
VEVLSSGTGG TRSGALQVML AEVQLLSPLV PARQVSFLRF CKKHAEGLWA VVDVSVDIGR  420
NVTNSHPLMS CRRLPSGCVI QDMPNGFSNI TWVEHSQYDE SVIHQLYRPL VSSGIGFGAQ  480
RWIATLLRQC DCLAILRSPQ GPSEDPTAQA GRTNMMKLAQ RMTECFCSGI CASSACKWDI  540
LHIGNLADDM RIMARKIDDP TEAPGIVLSA STSVWMPVSR KRVFDFLRDE NLRGEWDLLS  600
KDGPMKEMLH IAKGQDRGNC VSILHSANSE CNVLYLQESW SDASGSMVVY SPINMQALQM  660
VMSCGDSSFV PLRPSGFAIL PDGTSNNGDG SDGGGSCLLT VGLQMLPNGN HQSAKFTMES  720
VDAVNNLISF TIQKVKDALG VA*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269|PubMed:10402424}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G196700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006599621.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
RefseqXP_006599622.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X2
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLK7MIK70.0K7MIK7_SOYBN; Uncharacterized protein
STRINGGLYMA16G32130.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]