PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.16G182400.1.p

Common Name

GLYMA_16G182400, LOC100797708

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Nin-like

Protein Properties

Length: 988aa MW: 109306 Da PI: 6.5262

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.16G182400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.5	2.6e-28	576	625	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +isl++l++yF +++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rkik++ Glyma.16G182400.1.p 576 ISISLNVLQHYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKV 625 589*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.642	562	645	IPR003035	RWP-RK domain
Pfam	PF02042	6.4E-25	578	625	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.24E-21	886	972	No hit	No description
PROSITE profile	PS51745	23.082	887	969	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.4E-25	887	968	No hit	No description
SMART	SM00666	1.1E-24	887	969	IPR000270	PB1 domain
CDD	cd06407	2.89E-34	888	968	No hit	No description
Pfam	PF00564	3.7E-18	888	968	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 988 aa Download sequence Send to blast
MSESKEENPD LLLKSKAQEE HGFVMDFGIG LESLWPLDHI SLVSNPMPPF LFSTISEQPF 60 SPVWAFSDAE DERQIRIAAS GNTNTTTENP IENDDNKKTV PPLVAMTASE NPDGYCLIKE 120 RMTQALRHFK ELTEQNVLAQ VWAPVRNGNR YALTTSGQPF VLDPHSNGLH QYRTASLMYM 180 FSVDGENDEI LGLPGRVFQH KIPEWTPNVQ FYSSKEYQRL NHAQHYNVRG TLALPVFELA 240 GQSCVAVVEL IMTSQKINYA PEVDKICKAL EAVKLRSSEI LEHPYNQICN EYRQYALAEI 300 LEILTAVCET HSLPLAQTWV PCKHRSVLAH GGGLKKICSS FNGCCMGQVC MSITEVAFYV 360 IDAHKWGFHE ACAEHHLQQG QGVAGRAFLS HNMCFCGNNT QFCKTEYPLV HYALMFHLNS 420 CFAVCLQSSH TGNDDYVLEF FLPPGITDFN EQKRLLGSIL ATMKPHFQSL KIASGVELEG 480 NASIEIIDAR NERVHLRFES IPITQSSKSP PRHTSPNMGE GLPLEPSEPK IMAYFDGIND 540 GGSLGDNAGG HIDQNTSLEI KTKKKPSDRK RGKAEISISL NVLQHYFTGS LKDAAKSLGV 600 CPTTMKRICR QHGISRWPSR KIKKVNHSLS KLKCVIESVH GAEGAFGLNS LSTGSLPIAA 660 GSFSDPFTSN KFHRQTTLTI RPSEPKINEN DFDAFGASET KRQVAMEDQF LGLEARTRSP 720 EKVINDKGVS IQEIGTKGTN KFRTGSGSSG SGNPTHASCH GSPPNEISPP KDTFVTGNSE 780 QCLVLRGSLG STTLHSTSTP NRATAYPMLH IVETTEPQEP FGGQLLEVAG SSKDLRNLCP 840 SADAVLEDQV PEAYKMNPQC SDLPQMQHMD TLNKTMTPFA VRKEVNSVTI KATYKEDIIR 900 FKVSMDCGIV ELKEEIAKRL KLEVGTFHNK YLDDDHEWVL IACDADLQEC MDISRSSGGN 960 IIRLVVHDIL PILGSSCESS RDWKGCI*

Sequence ? help Back to Top

Protein Sequence Length: 988 aa Download sequence Send to blast

MSESKEENPD LLLKSKAQEE HGFVMDFGIG LESLWPLDHI SLVSNPMPPF LFSTISEQPF  60
SPVWAFSDAE DERQIRIAAS GNTNTTTENP IENDDNKKTV PPLVAMTASE NPDGYCLIKE  120
RMTQALRHFK ELTEQNVLAQ VWAPVRNGNR YALTTSGQPF VLDPHSNGLH QYRTASLMYM  180
FSVDGENDEI LGLPGRVFQH KIPEWTPNVQ FYSSKEYQRL NHAQHYNVRG TLALPVFELA  240
GQSCVAVVEL IMTSQKINYA PEVDKICKAL EAVKLRSSEI LEHPYNQICN EYRQYALAEI  300
LEILTAVCET HSLPLAQTWV PCKHRSVLAH GGGLKKICSS FNGCCMGQVC MSITEVAFYV  360
IDAHKWGFHE ACAEHHLQQG QGVAGRAFLS HNMCFCGNNT QFCKTEYPLV HYALMFHLNS  420
CFAVCLQSSH TGNDDYVLEF FLPPGITDFN EQKRLLGSIL ATMKPHFQSL KIASGVELEG  480
NASIEIIDAR NERVHLRFES IPITQSSKSP PRHTSPNMGE GLPLEPSEPK IMAYFDGIND  540
GGSLGDNAGG HIDQNTSLEI KTKKKPSDRK RGKAEISISL NVLQHYFTGS LKDAAKSLGV  600
CPTTMKRICR QHGISRWPSR KIKKVNHSLS KLKCVIESVH GAEGAFGLNS LSTGSLPIAA  660
GSFSDPFTSN KFHRQTTLTI RPSEPKINEN DFDAFGASET KRQVAMEDQF LGLEARTRSP  720
EKVINDKGVS IQEIGTKGTN KFRTGSGSSG SGNPTHASCH GSPPNEISPP KDTFVTGNSE  780
QCLVLRGSLG STTLHSTSTP NRATAYPMLH IVETTEPQEP FGGQLLEVAG SSKDLRNLCP  840
SADAVLEDQV PEAYKMNPQC SDLPQMQHMD TLNKTMTPFA VRKEVNSVTI KATYKEDIIR  900
FKVSMDCGIV ELKEEIAKRL KLEVGTFHNK YLDDDHEWVL IACDADLQEC MDISRSSGGN  960
IIRLVVHDIL PILGSSCESS RDWKGCI*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.61763	0.0	leaf\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. Detected in root hairs, emerging secondary roots, vascular tissues, leaf parenchyma cells and stomata. {ECO:0000269\|PubMed:18826430}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.16G182400.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	0.0	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003548181.1	0.0	protein NLP7 isoform X1
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	I1MPM2	0.0	I1MPM2_SOYBN; Uncharacterized protein
STRING	GLYMA16G30180.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4257	34	56
Representative plant	OGRP299	16	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	Glyma.16G182400.1.p
Entrez Gene	100797708

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]