PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G177000.1.p
Common NameGLYMA_16G177000, LOC100796829
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 409aa    MW: 44495.1 Da    PI: 6.2281
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G177000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.56.6e-29198256259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D ++WrKYGqK++kgs++pr+YYrC+s  gC ++k+vers+++p+++++tY+g+H+h 
  Glyma.16G177000.1.p 198 SDLWAWRKYGQKPIKGSPYPRNYYRCSSCkGCVARKQVERSTTEPNTFIVTYTGDHKHA 256
                          799***********************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.9E-29184258IPR003657WRKY domain
SuperFamilySSF1182908.11E-25192258IPR003657WRKY domain
PROSITE profilePS5081131.514192258IPR003657WRKY domain
SMARTSM007741.2E-32197257IPR003657WRKY domain
PfamPF031061.9E-23199255IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MTHEDWDLFA IVRSCKAATF TATTNTETPP TPAPNTTSCL DLSQENGSFS FPNLVQPTTN  60
GFQELQHQQL VINFNPTNTT STTSSTSTIT SGLGINPNST FSEVAGFIGQ QQGYHHHLLP  120
APTNHTSIGT PTTTGFDRFQ HHQQQQLQSP EQNQPPLQAP QTSPILSPTT QPQTPRSRKR  180
KSHQKKMVCH VTADNLSSDL WAWRKYGQKP IKGSPYPRNY YRCSSCKGCV ARKQVERSTT  240
EPNTFIVTYT GDHKHAKPVQ RNSLAGSTRT KPSTTRLSEP NESVTCPKRE NACSSNSELS  300
PMLSVSDTPK NEETVSAGEP DCPDMEIEPS ENDDDDVLIP NTGAMSDAVL LGLTNVDRDG  360
VSTLGIDQKN TSGSCQSYPE PDPFSKPGLY SSALGPAKLA DLLDDCNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-17186258274WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176181SRKRKS
2178182KRKSH
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G177000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150449e-41AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003549016.10.0probable WRKY transcription factor 27
RefseqXP_028206725.10.0probable WRKY transcription factor 27
TrEMBLA0A445GK180.0A0A445GK18_GLYSO; Putative WRKY transcription factor 27 isoform A
TrEMBLA0A445GK190.0A0A445GK19_GLYSO; Putative WRKY transcription factor 27 isoform B (Fragment)
TrEMBLK7MHZ90.0K7MHZ9_SOYBN; Uncharacterized protein
STRINGGLYMA16G29561.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67943249
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.14e-51WRKY DNA-binding protein 27