PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.16G176700.1.p

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

WRKY

Protein Properties

Length: 275aa MW: 30049.4 Da PI: 6.7627

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.16G176700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	92.4	3.5e-29	70	128	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s gC ++k+vers+++p+++++tY+g+H+h Glyma.16G176700.1.p 70 SDLWAWRKYGQKPIKGSPYPRNYYRCSSCkGCVARKQVERSTTEPNTFIVTYTGDHKHA 128 799*********************9988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.3E-29	55	130	IPR003657	WRKY domain
PROSITE profile	PS50811	31.514	64	130	IPR003657	WRKY domain
SuperFamily	SSF118290	4.18E-25	64	130	IPR003657	WRKY domain
SMART	SM00774	1.2E-32	69	129	IPR003657	WRKY domain
Pfam	PF03106	9.9E-24	71	127	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MGSATETLCG QDFEAGQQLQ SPEQNQPPPQ APQTSPILSP TTQPQTPRSR KRKSQQKKMV 60 CHVTADNLSS DLWAWRKYGQ KPIKGSPYPR NYYRCSSCKG CVARKQVERS TTEPNTFIVT 120 YTGDHKHAKP VHRNSLAGST RTKPSTTRLS EPNESVSCPK KENACSSNSE LSPMLSVSDT 180 LENEETVSAS EPDCPDMEIE PSDNDDVLIP NTGAMSDAVL LGLTNVERDG VSTSEKHFRV 240 GTVLSGTRPD FQPGLDSSAL RRTKLADLHD DCNL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-17	58	130	2	74	WRKY transcription factor 1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	48	53	SRKRKS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.16G176700.1.p

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	7e-50	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028208037.1	0.0	probable WRKY transcription factor 27
Swissprot	Q9FLX8	1e-52	WRK27_ARATH; Probable WRKY transcription factor 27
TrEMBL	A0A368UKF4	0.0	A0A368UKF4_SOYBN; Uncharacterized protein
STRING	GLYMA16G29501.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6794	32	49
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52830.1	2e-48	WRKY DNA-binding protein 27

Link Out ? help Back to Top
Phytozome	Glyma.16G176700.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Mukhtar MS,Liu X,Somssich IE Elucidating the role of WRKY27 in male sterility in Arabidopsis. Plant Signal Behav, 2017. 12(9): p. e1363945 [PMID:28816593]