PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.16G164800.1.p | ||||||||
Common Name | GLYMA_16G164800, Glyma16g27950.1, LOC100817436 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 454aa MW: 49559.2 Da PI: 6.9726 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.9 | 1.7e-20 | 210 | 259 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+t+e Aa+a+++a+++++g Glyma.16G164800.1.p 210 KYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTEEAAARAYDEAALRFRG 259 8********.**********7.....337*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 8.1E-33 | 209 | 268 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-23 | 210 | 268 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 25.791 | 210 | 267 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.6E-38 | 210 | 273 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-14 | 210 | 259 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.09E-22 | 210 | 269 | No hit | No description |
PRINTS | PR00367 | 4.8E-11 | 211 | 222 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-11 | 233 | 249 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 454 aa Download sequence Send to blast |
MSLLTVAHQR GSGEFIRFTE SHGGGGDDVS GDGEHGCGHD DGSGAGGSLG LNFNQVMQQG 60 EVTMQGGSLV SGYNRGDPEL REIVSALTHV VSSGSGQRST EWTQQSGFPM MSASSLSRLS 120 AFSSSSPSPS SGASWVGHKR GREEEENSTS HNLMQQQQQS APRLFRNIGD FMVPSQGDSS 180 SVTEEAPTST TTTVTAVTEN PPGGGERRRK YRGVRQRPWG KWAAEIRDPH KAARVWLGTF 240 DTEEAAARAY DEAALRFRGN RAKLNFPENV RAVPPIQPFQ ATTRLTVSDS TTSQFRPLSA 300 VAPPFIQQPQ IQGSSDLIRD YLQYSQLLQS DFQQQQIQQQ QQQQRQQQQR QRQQRQQQQQ 360 QQQQPSSLLQ QLYYNAQFAS LQSPSMLSSS PSFSSSVSPA PFPLFTTSAS FPLFSSQQMG 420 YFQPPESRNP AGGVPEFPTS TWSDTSSQPP PSG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-22 | 209 | 270 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 205 | 210 | ERRRKY |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.35107 | 0.0 | hypocotyl| leaf| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.16G164800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031092 | 0.0 | KT031092.1 Glycine max clone HN_CCL_185 AP2-EREBP transcription factor (Glyma16g27950.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014623949.1 | 0.0 | ethylene-responsive transcription factor ABR1 isoform X1 | ||||
TrEMBL | I1MP48 | 0.0 | I1MP48_SOYBN; AP2-EREBP transcription factor | ||||
STRING | GLYMA16G27950.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4919 | 32 | 53 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 1e-28 | ethylene response factor 110 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.16G164800.1.p |
Entrez Gene | 100817436 |
Publications ? help Back to Top | |||
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