PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G155300.1.p
Common NameGLYMA_16G155300, LOC100783228
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 334aa    MW: 35901.2 Da    PI: 5.693
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G155300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.21.9e-17239272134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  Glyma.16G155300.1.p 239 CLHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 272
                          99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169926.9E-772327IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.438233269IPR000679Zinc finger, GATA-type
SMARTSM004017.4E-17233283IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.3E-14237270IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.57E-14237296No hitNo description
CDDcd002021.31E-13238285No hitNo description
PROSITE patternPS003440239264IPR000679Zinc finger, GATA-type
PfamPF003204.1E-15239272IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MIGNFIDDID CGNFFDHIDD LLEFPDDAAA ADTSAAAPVP PPANFWSAES DSLPATDTVF  60
SDNSVTDLSA ELSVPYEDIM QLEWLSNFVE DSFSGGSMTM KKEEPQCTTT KEDIAPAQFQ  120
TASPVSVLES SSFCSGEKAG TEINISVPCG RARSKRPRPA TFNPNPVMQL ISPASSTGEN  180
TQHNAANTSK ASSDSENFAE SVIKAPKQAS GEHKKKKKIK VTFPSGQERN APSQAIRKCL  240
HCEITKTPQW RAGPMGPKTL CNACGVRYKS GRLFPEYRPA ASPTFCAAMH SNSHKKVLEM  300
RNKTGTKSGF ATVSAASPEL IPNTNSSLTL EYM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154158KRPRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.267440.0hypocotyl
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G155300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003548072.10.0GATA transcription factor 8
RefseqXP_006599443.10.0GATA transcription factor 8
TrEMBLK7MHJ90.0K7MHJ9_SOYBN; GATA transcription factor
STRINGGLYMA16G27171.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48873356
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.12e-44GATA transcription factor 9