PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G154100.1.p
Common NameGLYMA_16G154100, LOC100792432
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 337aa    MW: 37769.6 Da    PI: 5.4666
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G154100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.5e-183383155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         s+y GVr++  +g+WvAeI+d +   ++ r +lg++ taeeAa+a+++a+  l+g
  Glyma.16G154100.1.p 33 SKYVGVRQRA-SGKWVAEIKDTT---QKIRMWLGTYETAEEAARAYDEAACLLRG 83
                         89*****999.7*********32...35**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.33E-323390No hitNo description
PfamPF008476.9E-133383IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-193391IPR016177DNA-binding domain
SMARTSM003804.4E-343497IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-273490IPR001471AP2/ERF domain
PROSITE profilePS5103219.4273491IPR001471AP2/ERF domain
PRINTSPR003671.8E-73546IPR001471AP2/ERF domain
PRINTSPR003671.8E-75773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MEIQFQHPKQ HLRANTSKGG KVFKGRNNNK TKSKYVGVRQ RASGKWVAEI KDTTQKIRMW  60
LGTYETAEEA ARAYDEAACL LRGSNTRTNF ITRVSLDSPL ASRIQNLLNS RNGTKTKHQE  120
QDVETCHTRI KSNRQESSVA LAEGTCPPQH DELRFESSLE DMSTFSIQPY IDQDCLQKKI  180
LVENEKKRRV NSTTSTASAS TSNSTNSSNN SDTCENSLSS ETTQNTQQFD DDDDAYRPDL  240
SNFIGSESGS QNNPSWGFEP SSFVHFPFSQ VMDVANLPDI AGLELPDFER MKVERQISAS  300
LYAINGVQEY MDTVTVQDSN NNVAIWDFPP LCSFLC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1325100581Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.362830.0seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G154100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0923440.0BT092344.1 Soybean clone JCVI-FLGm-15F24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014624309.10.0ethylene-responsive transcription factor ERN1
TrEMBLI1MNV30.0I1MNV3_SOYBN; Uncharacterized protein
STRINGGLYMA16G27040.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1869946
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-23related to AP2 11