PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.16G152200.1.p | ||||||||
Common Name | GLYMA_16G152200, LOC100789797 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | G2-like | ||||||||
Protein Properties | Length: 417aa MW: 46867.7 Da PI: 6.8837 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.6 | 2.9e-33 | 45 | 99 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG++kAtPkt+l+lm+++gLtl+h+kSHLQkYR+ Glyma.16G152200.1.p 45 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVLKLMGIPGLTLYHLKSHLQKYRI 99 79****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.201 | 42 | 102 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-31 | 43 | 100 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.5E-17 | 44 | 100 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.6E-23 | 45 | 100 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.8E-10 | 47 | 98 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.5E-22 | 146 | 193 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MYYQQQQQAK NMHALRMHSP TERHMMLQGG NGAGDPGLVL STDAKPRLKW TPDLHERFIE 60 AVNQLGGADK ATPKTVLKLM GIPGLTLYHL KSHLQKYRIS KNMHGQTNTS NNKIASTMEA 120 ATGISEASGV QMKHLSIGLQ TNKNSEINDA LQMQIEVQRR LHEQLEQVQR HLQLRIEAQG 180 KYLQAVLEKA QETLGRQNLG AEGVEAAKVQ LSELASRVSP QSLDSKFSEL KELQVLWPQQ 240 TQEGQATDCS MGSFLNYSEE SQRDRETHSM NLNLRACNGP PFSVSKGCAE ESMHLKPDYR 300 LCDEVKENMM FLSSSSNSKV VKGDFLSERP SSLLSMNVGV QEEENFGRTT VPKEEGWKRR 360 ESTETGRVPV KLNYEKISQD YRLANFDVKL DLNSHDDNDA SSHCQQFDLN GFSWNC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 5e-21 | 44 | 101 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 5e-21 | 44 | 101 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 5e-21 | 45 | 101 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-21 | 45 | 101 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-21 | 45 | 101 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-21 | 45 | 101 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 5e-21 | 44 | 101 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 5e-21 | 44 | 101 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 5e-21 | 44 | 101 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 5e-21 | 44 | 101 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 5e-21 | 44 | 101 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 5e-21 | 44 | 101 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.23782 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in phloem and/or cambium. {ECO:0000269|PubMed:15923329}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.16G152200.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006599430.1 | 0.0 | myb-related protein 2 isoform X2 | ||||
Refseq | XP_028205820.1 | 0.0 | myb-related protein 2-like isoform X2 | ||||
Swissprot | Q9SQQ9 | 1e-126 | PHL9_ARATH; Myb-related protein 2 | ||||
TrEMBL | A0A445GIY7 | 0.0 | A0A445GIY7_GLYSO; Myb-related protein 2 isoform A | ||||
TrEMBL | K7MHH8 | 0.0 | K7MHH8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA16G26820.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3852 | 31 | 63 | Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04030.3 | 1e-128 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.16G152200.1.p |
Entrez Gene | 100789797 |
Publications ? help Back to Top | |||
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