PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.16G152100.1.p | ||||||||
Common Name | GLYMA_16G152100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 411aa MW: 46655.3 Da PI: 6.7774 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 181.3 | 2.4e-56 | 23 | 149 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdee++++yL++kv ++ +++ ++i e+d +k+ePwdLpkk+k +ek+wyfF++rd+ky+tg r+nrat+sgyWkatgkdk Glyma.16G152100.1.p 23 LPPGFRFHPTDEEIITCYLTEKVLNRAFSA-TAIGEADFNKCEPWDLPKKAKMGEKDWYFFCQRDRKYPTGMRTNRATQSGYWKATGKDK 111 79**************************99.88***************99999************************************* PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 e+++ k++lvg+kktLvfy+grapkgekt+Wvmhe+rl Glyma.16G152100.1.p 112 EIFKGKNNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRL 149 ****99******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-61 | 21 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.036 | 23 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.7E-29 | 24 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 411 aa Download sequence Send to blast |
MMEEPVVVNK GDYDHDHDQP LDLPPGFRFH PTDEEIITCY LTEKVLNRAF SATAIGEADF 60 NKCEPWDLPK KAKMGEKDWY FFCQRDRKYP TGMRTNRATQ SGYWKATGKD KEIFKGKNNL 120 VGMKKTLVFY RGRAPKGEKT NWVMHEFRLD GKFACYNLPK AAKDEWVVCK VFHKSSTTTT 180 DVNKRVLPII NPGLLRMNSS NGEDLLFDFS SLPPLVDPLF DQTSNKHIDN DFKGTNNTPS 240 SSSAKLPSSS GYYLPNFNNN NNQQMLMMKP EEHKIYEIPI NNYASTSQVD FTTTNNPMGI 300 STSNNNILLS QPQIRTQNST SVPFNMFQDC YNHTHQGKQC KMEQFSIDST KKQPVVSASQ 360 DTCLSNDTSS VVSKQDNNMG RNKALYEDNF EGPSSVATTL SDLECLWDDY * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-51 | 21 | 178 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-51 | 21 | 178 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-51 | 21 | 178 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-51 | 21 | 178 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-51 | 21 | 178 | 18 | 172 | NAC domain-containing protein 19 |
3swm_B | 3e-51 | 21 | 178 | 18 | 172 | NAC domain-containing protein 19 |
3swm_C | 3e-51 | 21 | 178 | 18 | 172 | NAC domain-containing protein 19 |
3swm_D | 3e-51 | 21 | 178 | 18 | 172 | NAC domain-containing protein 19 |
3swp_A | 3e-51 | 21 | 178 | 18 | 172 | NAC domain-containing protein 19 |
3swp_B | 3e-51 | 21 | 178 | 18 | 172 | NAC domain-containing protein 19 |
3swp_C | 3e-51 | 21 | 178 | 18 | 172 | NAC domain-containing protein 19 |
3swp_D | 3e-51 | 21 | 178 | 18 | 172 | NAC domain-containing protein 19 |
4dul_A | 3e-51 | 21 | 178 | 15 | 169 | NAC domain-containing protein 19 |
4dul_B | 3e-51 | 21 | 178 | 15 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.23316 | 0.0 | flower| hypocotyl| leaf| root| somatic embryo |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.16G152100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU661922 | 0.0 | EU661922.1 Glycine max NAC domain protein (NAC23) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001238186.2 | 0.0 | NAC domain protein | ||||
Refseq | XP_028205611.1 | 0.0 | NAC domain-containing protein 87-like | ||||
Swissprot | Q9FK44 | 1e-113 | NAC87_ARATH; NAC domain-containing protein 87 | ||||
TrEMBL | A0A0B2RLC1 | 0.0 | A0A0B2RLC1_GLYSO; NAC domain-containing protein 100 | ||||
TrEMBL | I1MNT1 | 0.0 | I1MNT1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA16G26810.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF409 | 34 | 171 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.1 | 1e-109 | Arabidopsis NAC domain containing protein 87 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.16G152100.1.p |
Entrez Gene | 100170716 |
Publications ? help Back to Top | |||
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