PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G141300.1.p
Common NameGLYMA_16G141300, LOC100785004
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 541aa    MW: 60263.1 Da    PI: 6.2685
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G141300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS291.72e-891745392374
                 GRAS   2 velLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                          +e L+++A++++s++++laqa+L+rl+++  +sp g+p++R+a++f+ AL++ la+s  + ++    + +s  + +++++ +k+fs +sP
  Glyma.16G141300.1.p 174 IEELIRAADCFDSSHFQLAQAILERLNNRllRSPMGKPLHRAAFHFKDALQSILAGSNRTSSN----RLSSMAEIVQTIKTYKAFSGISP 259
                          679************************9889*************************4444443....333333499************** PP

                 GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
                          i+ fs +t+Nqa+le ++g++ vH+iDf+i+ G+Q+++L++++a+++  + +p lRiT+v+++e   + e + ++e+L++fA+ lg++ +
  Glyma.16G141300.1.p 260 IPMFSVFTTNQALLETLNGSSFVHVIDFEIGLGIQYASLMKEIAEKAgaGASPLLRITAVVPEE--YAVESRLVRENLNQFAQDLGISAQ 347
                          **********************************************987889**********66..99999******************* PP

                 GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyy 264
                           +++  +++e++++++ r+  gE++aV l+ ++++ l +++ +     ++L  v+++sP vvv+v+ e  ++   ++sF ++++++le+y
  Glyma.16G141300.1.p 348 VDFVPLRTFETVSFKAVRFVDGEKIAVLLSPAIFSRLGSNGGSVG---AFLADVRRVSPGVVVFVDGEgwTEAaAAASFRRGVVSSLEFY 434
                          ***9999*****************************966666666...9*******************543444677************* PP

                 GRAS 265 salfdsleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352
                          s++++sl+a++++    e+ + +E +ll+++i  +v   ga+     ++   Wre++ +a ++pv+ls++a  qa++ll+kv+ +g++v+
  Glyma.16G141300.1.p 435 SMMLESLDASVAAGGggEWVRRIEMMLLRPKIFAAVE--GAR-----RRTPPWREAFYDAAMRPVQLSQFADYQAECLLAKVQIRGFHVD 517
                          **********9998888999************99885..555.....3479*************************************** PP

                 GRAS 353 eesgslvlgWkdrpLvsvSaWr 374
                          +++++lvl+W++r +v++SaWr
  Glyma.16G141300.1.p 518 KRHAELVLCWHERVMVATSAWR 539
                          *********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.829147519IPR005202Transcription factor GRAS
PfamPF035146.9E-87174539IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MRVPSSPQPN NNHSPTSNLV LHTNNNPTTT FTYEPTSVLD LCRSPSPEKK LTVPKPEPQH  60
NNNNNNLNLD LDDHVLPNSD WWESIMKDLA LPEDSPTPLL KTNINPSCIP DFPPSSQDPP  120
FDHPQDFTSL SEIYNQNLPY NYPTNTLEHS FYDLSHNHHH NNNNNVNNNN WDFIEELIRA  180
ADCFDSSHFQ LAQAILERLN NRLLRSPMGK PLHRAAFHFK DALQSILAGS NRTSSNRLSS  240
MAEIVQTIKT YKAFSGISPI PMFSVFTTNQ ALLETLNGSS FVHVIDFEIG LGIQYASLMK  300
EIAEKAGAGA SPLLRITAVV PEEYAVESRL VRENLNQFAQ DLGISAQVDF VPLRTFETVS  360
FKAVRFVDGE KIAVLLSPAI FSRLGSNGGS VGAFLADVRR VSPGVVVFVD GEGWTEAAAA  420
ASFRRGVVSS LEFYSMMLES LDASVAAGGG GEWVRRIEMM LLRPKIFAAV EGARRRTPPW  480
REAFYDAAMR PVQLSQFADY QAECLLAKVQ IRGFHVDKRH AELVLCWHER VMVATSAWRC  540
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-2119053825378Protein SCARECROW
5b3h_A2e-2119053824377Protein SCARECROW
5b3h_D2e-2119053824377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.588030.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G141300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8235520.0AB823552.1 Glycine max gene for gras family protein, complete cds, cultivar: Hayahikari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003547994.10.0scarecrow-like protein 15
RefseqXP_028205333.10.0scarecrow-like protein 15
SwissprotO232101e-159SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A445GIG00.0A0A445GIG0_GLYSO; Scarecrow-like protein 15
TrEMBLI1MNH60.0I1MNH6_SOYBN; Gras family protein
STRINGGLYMA16G25570.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59593252
Representative plantOGRP10323610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-138GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Funatsuki H, et al.
    Molecular basis of a shattering resistance boosting global dissemination of soybean.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(50): p. 17797-802
    [PMID:25468966]