PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.16G138500.1.p | ||||||||
Common Name | GLYMA_16G138500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 69aa MW: 8123.23 Da PI: 5.6923 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.4 | 5.7e-07 | 4 | 46 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT+ +++ +a + + + +W Ia+++g ++ +++k ++ Glyma.16G138500.1.p 4 SWTPRQNKIFEHALAIYDREtpdRWQNIAKMVG--KSIEEVKMHY 46 7*****************88************8..9******999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 11.962 | 1 | 54 | IPR017884 | SANT domain |
SMART | SM00717 | 1.5E-5 | 1 | 52 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.59E-12 | 3 | 57 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.2E-4 | 4 | 56 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.53E-4 | 4 | 50 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 69 aa Download sequence Send to blast |
MESSWTPRQN KIFEHALAIY DRETPDRWQN IAKMVGKSIE EVKMHYEILK EDIKRIEQDQ 60 VPFPYAGS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-22 | 5 | 64 | 11 | 71 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.16G138500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007156953.1 | 4e-33 | hypothetical protein PHAVU_002G031300g | ||||
Swissprot | F4JVB8 | 2e-23 | RADL1_ARATH; Protein RADIALIS-like 1 | ||||
TrEMBL | A0A0B2PTV9 | 1e-43 | A0A0B2PTV9_GLYSO; Uncharacterized protein | ||||
TrEMBL | K7MH89 | 1e-43 | K7MH89_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA16G25260.2 | 2e-44 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 | Representative plant | OGRP347 | 12 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 8e-26 | RAD-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.16G138500.1.p |
Publications ? help Back to Top | |||
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