PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.16G097400.1.p | ||||||||
Common Name | GLYMA_16G097400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 217aa MW: 24509.2 Da PI: 7.5976 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 58.8 | 1.4e-18 | 173 | 216 | 1 | 44 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-T CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCq 44 +Cq+egC+adls+ak+yh+rhkvCe+hska++v+++gl+qr Cq Glyma.16G097400.1.p 173 RCQAEGCNADLSQAKHYHHRHKVCEFHSKAATVIAAGLTQRLCQ 216 6******************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.1E-19 | 169 | 216 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 17.289 | 171 | 216 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.44E-17 | 172 | 216 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.9E-13 | 174 | 216 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 217 aa Download sequence Send to blast |
MLTRNEDSSA TASDQTHRQI FDHYASNTFI PNHFLHAPMH STATTVATTT VDFTHSHFNP 60 QPHHHNQMNH HQHHHAFFDP RAFHDASNTS YPHPLPCFHL THCLTNGPEP YRLLLVPKSE 120 EVGWPMDFVG SRIGLNMGGR TYFSSSEDDF VSRLYRRSRP VEPGSTILSN SPRCQAEGCN 180 ADLSQAKHYH HRHKVCEFHS KAATVIAAGL TQRLCQ* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.10787 | 1e-135 | flower| hypocotyl| root |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.16G097400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003530168.1 | 1e-105 | squamosa promoter-binding-like protein 8 | ||||
TrEMBL | A0A0R0FW55 | 1e-160 | A0A0R0FW55_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA16G19464.1 | 1e-113 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6801 | 33 | 48 | Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G02065.2 | 3e-48 | squamosa promoter binding protein-like 8 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.16G097400.1.p |