PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.16G092100.1.p

Common Name

GLYMA_16G092100

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB

Protein Properties

Length: 301aa MW: 34054.6 Da PI: 7.1136

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.16G092100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	64.4	2.2e-20	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l d++ ++G gtW+t +++ g++R++k+c++rw +yl Glyma.16G092100.1.p 14 KGPWTPEEDEKLMDYISKHGRGTWRTLPKHAGLNRCGKSCRLRWENYL 61 79********************************************97 PP
2	Myb_DNA-binding	56.4	7e-18	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eE++l+++++ G++ W++Ia +++ gRt++++k++w++ Glyma.16G092100.1.p 67 RGKFTEEEEQLIINLHSVIGNK-WAKIATHLP-GRTDNEIKNYWNTN 111 89******************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.7E-26	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.436	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	3.74E-32	11	108	IPR009057	Homeodomain-like
SMART	SM00717	3.7E-15	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	8.3E-18	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	2.14E-11	16	61	No hit	No description
PROSITE profile	PS51294	28.038	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-26	65	116	IPR009057	Homeodomain-like
SMART	SM00717	4.9E-17	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	9.2E-17	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	2.71E-12	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MGRPPCCNES GVKKGPWTPE EDEKLMDYIS KHGRGTWRTL PKHAGLNRCG KSCRLRWENY 60 LRPDIKRGKF TEEEEQLIIN LHSVIGNKWA KIATHLPGRT DNEIKNYWNT NLRKKLLQMG 120 IDPETHKPRT DFNHLLNLSQ LLGLSNLGTS TSPWTNPLGL QADVTQIAKL QLLQNMLQLF 180 NGTSLVNIGN PYLLGNQILN PLDTFLNGTN ILPDKDSILR GLEYANPVEN QAENLLPALV 240 ASGPRSSTFN QMDFNYNAAR MSTQSPSTTF EAWEKFLIDD DESSGSYWKE ILDLTYPLSW 300 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-32	14	116	7	108	B-MYB
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269\|PubMed:24902892, ECO:0000269\|PubMed:25482809}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.16G092100.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235268	0.0	AC235268.1 Glycine max strain Williams 82 clone GM_WBb0044I02, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003548667.2	0.0	transcription factor MYB53
Swissprot	Q9S9Z2	6e-82	MYB93_ARATH; Transcription factor MYB93
TrEMBL	A0A0R0FYK1	0.0	A0A0R0FYK1_SOYBN; Uncharacterized protein
STRING	GLYMA16G13440.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF402	34	172
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02940.1	4e-85	myb domain protein 107

Link Out ? help Back to Top
Phytozome	Glyma.16G092100.1.p

Publications ? help Back to Top
Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]