PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.16G084000.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | LBD | ||||||||
Protein Properties | Length: 51aa MW: 5885.85 Da PI: 9.7092 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 49.5 | 1.2e-15 | 13 | 49 | 4 | 40 |
DUF260 4 aCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGas 40 aCk+lrrkC dC+++pyfp ++p+kf nvhk+F+as Glyma.16G084000.2.p 13 ACKFLRRKCMLDCIFSPYFPPKEPQKFTNVHKIFRAS 49 9*********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 13.546 | 9 | 50 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-13 | 12 | 49 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 51 aa Download sequence Send to blast |
MASSSYSNSP YDACKFLRRK CMLDCIFSPY FPPKEPQKFT NVHKIFRASF * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-17 | 3 | 49 | 4 | 50 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-17 | 3 | 49 | 4 | 50 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.53058 | 5e-62 | stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.16G084000.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT090839 | 1e-59 | BT090839.1 Soybean clone JCVI-FLGm-5B3 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003553820.1 | 1e-22 | LOB domain-containing protein 25 isoform X2 | ||||
Refseq | XP_006604045.1 | 1e-22 | LOB domain-containing protein 25 isoform X2 | ||||
Refseq | XP_014626928.1 | 1e-22 | LOB domain-containing protein 25 isoform X2 | ||||
Refseq | XP_014626929.1 | 1e-22 | LOB domain-containing protein 25 isoform X2 | ||||
Refseq | XP_018859864.1 | 1e-22 | PREDICTED: LOB domain-containing protein 25-like | ||||
Refseq | XP_018859865.1 | 1e-22 | PREDICTED: LOB domain-containing protein 25-like | ||||
Refseq | XP_022740706.1 | 1e-22 | LOB domain-containing protein 25-like isoform X1 | ||||
Refseq | XP_022740707.1 | 1e-22 | LOB domain-containing protein 25-like isoform X2 | ||||
Refseq | XP_028217634.1 | 1e-22 | LOB domain-containing protein 25-like isoform X2 | ||||
Refseq | XP_028217635.1 | 1e-22 | LOB domain-containing protein 25-like isoform X2 | ||||
Refseq | XP_028217636.1 | 1e-22 | LOB domain-containing protein 25-like isoform X2 | ||||
Refseq | XP_028217638.1 | 1e-22 | LOB domain-containing protein 25-like isoform X2 | ||||
Swissprot | Q8L8Q3 | 6e-19 | LBD25_ARATH; LOB domain-containing protein 25 | ||||
TrEMBL | A0A0B2RLJ2 | 1e-28 | A0A0B2RLJ2_GLYSO; LOB domain-containing protein 25 (Fragment) | ||||
STRING | GLYMA16G09720.1 | 2e-26 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 3e-21 | LOB domain-containing protein 25 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.16G084000.2.p |
Publications ? help Back to Top | |||
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