PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G072700.2.p
Common NameGLYMA_16G072700, LOC100805329
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 427aa    MW: 48947.9 Da    PI: 9.6635
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G072700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.65.2e-17182228148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g W++eEd  lv++v+++G + W+ Iar ++ gR +kqc++rw+++l
  Glyma.16G072700.2.p 182 KGQWSAEEDRVLVQLVERFGFKKWSHIARLLN-GRVGKQCRERWHNHL 228
                          799*****************************.*************97 PP
2Myb_DNA-binding55.21.6e-17234276145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          + +W +eEd +l++a+k+ G++ W+ Iar+m+ gRt++ +k++w+
  Glyma.16G072700.2.p 234 KESWNEEEDRILIEAHKEVGNR-WAEIARRMP-GRTENTIKNHWN 276
                          578*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.661177232IPR017930Myb domain
SuperFamilySSF466893.59E-31179275IPR009057Homeodomain-like
SMARTSM007173.7E-15181230IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-27183236IPR009057Homeodomain-like
PfamPF139212.3E-18185242No hitNo description
CDDcd001671.07E-13185228No hitNo description
PROSITE profilePS5129420.689233283IPR017930Myb domain
SMARTSM007179.7E-17233281IPR001005SANT/Myb domain
CDDcd001675.51E-13236279No hitNo description
Gene3DG3DSA:1.10.10.602.2E-20237281IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MEFDPIFPAE KIHFLSGIFS GIKSEIPVIP MSQENNNNTI CMHQNNFNNH FQHLPLNEPN  60
HDHNHHHPTI TKIFTEGSNS SILTPLFCLS SSSGYSYRNE SLRGGFANNN NNYKHSIMPY  120
APNSTQNEPM HGPNRAIWDF SQKIPLQYSG AGASATSSQP HQVQRRSNGK IHQHRNMGNI  180
IKGQWSAEED RVLVQLVERF GFKKWSHIAR LLNGRVGKQC RERWHNHLRP NIRKESWNEE  240
EDRILIEAHK EVGNRWAEIA RRMPGRTENT IKNHWNATKR RLNAKRLRNK RRGLKGPTLL  300
ESYIRQVTAN EETQKEMIKN SMSNMNLKGE SSSNTTTTNT NTNTNTRYPH LFRVWYESSE  360
GGFSSEEDEA GWSVQQPHGV GGGYVPMMLN ATVEDGTMGY DVAMEMAPEV QMKKEMDLME  420
MIIRKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-431802812103C-Myb DNA-Binding Domain
1msf_C2e-431802812103C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G072700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003548575.10.0transcription factor MYB62 isoform X2
RefseqXP_028206906.10.0transcription factor MYB62-like isoform X2
TrEMBLA0A445GFG00.0A0A445GFG0_GLYSO; Transcription factor MYB98
TrEMBLK7MFP60.0K7MFP6_SOYBN; Uncharacterized protein
STRINGGLYMA16G07927.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.12e-56myb domain protein 98