PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.16G072700.1.p | ||||||||
Common Name | GLYMA_16G072700, LOC100805329 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 428aa MW: 49076 Da PI: 9.6635 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.6 | 5.2e-17 | 183 | 229 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd lv++v+++G + W+ Iar ++ gR +kqc++rw+++l Glyma.16G072700.1.p 183 KGQWSAEEDRVLVQLVERFGFKKWSHIARLLN-GRVGKQCRERWHNHL 229 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 55.2 | 1.6e-17 | 235 | 277 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +W +eEd +l++a+k+ G++ W+ Iar+m+ gRt++ +k++w+ Glyma.16G072700.1.p 235 KESWNEEEDRILIEAHKEVGNR-WAEIARRMP-GRTENTIKNHWN 277 578*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.661 | 178 | 233 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.67E-31 | 180 | 276 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.7E-15 | 182 | 231 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-27 | 184 | 236 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.08E-13 | 186 | 229 | No hit | No description |
Pfam | PF13921 | 2.3E-18 | 186 | 243 | No hit | No description |
SMART | SM00717 | 9.7E-17 | 234 | 282 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.689 | 234 | 284 | IPR017930 | Myb domain |
CDD | cd00167 | 5.49E-13 | 237 | 280 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-20 | 237 | 282 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 428 aa Download sequence Send to blast |
MEFDPIFPAE KIHFLSGIFS GIKSEIPVIP MSQENNNNTI CMHQNNFNNH FQHLPLNEPN 60 HDHNHHHPTI TKIFTEGSNS SILTPLFCLS SSSGYSYRNE SLRGGFANNN NNYKHSIMPY 120 APNSTQNEPM HGPNRAIWDF SQKIPLQYSG AGASATSSQP HQQVQRRSNG KIHQHRNMGN 180 IIKGQWSAEE DRVLVQLVER FGFKKWSHIA RLLNGRVGKQ CRERWHNHLR PNIRKESWNE 240 EEDRILIEAH KEVGNRWAEI ARRMPGRTEN TIKNHWNATK RRLNAKRLRN KRRGLKGPTL 300 LESYIRQVTA NEETQKEMIK NSMSNMNLKG ESSSNTTTTN TNTNTNTRYP HLFRVWYESS 360 EGGFSSEEDE AGWSVQQPHG VGGGYVPMML NATVEDGTMG YDVAMEMAPE VQMKKEMDLM 420 EMIIRKA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-43 | 181 | 282 | 2 | 103 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 9e-43 | 181 | 282 | 56 | 157 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 9e-43 | 181 | 282 | 56 | 157 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-43 | 181 | 282 | 2 | 103 | C-Myb DNA-Binding Domain |
1msf_C | 2e-43 | 181 | 282 | 2 | 103 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.16G072700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006599106.1 | 0.0 | myb-like protein A isoform X1 | ||||
Refseq | XP_028206905.1 | 0.0 | myb-like protein A isoform X1 | ||||
TrEMBL | K7MFP5 | 0.0 | K7MFP5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA16G07927.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1570 | 31 | 96 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 2e-56 | myb domain protein 98 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.16G072700.1.p |
Entrez Gene | 100805329 |