PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.16G071700.1.p | ||||||||
Common Name | GLYMA_16G071700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | LBD | ||||||||
Protein Properties | Length: 181aa MW: 20005.6 Da PI: 8.1023 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 142.7 | 1.2e-44 | 26 | 124 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrrkC +dC++apyfp e+p+kfanvhk+FGasnv+kll+++++++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l Glyma.16G071700.1.p 26 PCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRL 115 7***************************************************************************************** PP DUF260 91 kaelallke 99 ++el+++ + Glyma.16G071700.1.p 116 QKELDATSA 124 ****98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.786 | 25 | 126 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.1E-44 | 26 | 122 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MSYPPINSKR FLVVKIMASS SYSNSPCAAC KFLRRKCMPD CIFAPYFPPE EPQKFANVHK 60 IFGASNVSKL LNEVQPHQRE DAVNSLAYEA EARIKDPVYG CVGAISVLQR QVIRLQKELD 120 ATSADLIRYT CNEMPTTTQD GRRIIGEGGG SSLGQSSGYY YPSPWNNDTL GDGYHRGDNI 180 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-67 | 23 | 134 | 8 | 119 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-67 | 23 | 134 | 8 | 119 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.53058 | 0.0 | stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.16G071700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT090839 | 1e-165 | BT090839.1 Soybean clone JCVI-FLGm-5B3 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003548568.1 | 1e-122 | LOB domain-containing protein 25 | ||||
Refseq | XP_014624042.1 | 1e-122 | LOB domain-containing protein 25 | ||||
Refseq | XP_014624043.1 | 1e-122 | LOB domain-containing protein 25 | ||||
Refseq | XP_014624044.1 | 1e-122 | LOB domain-containing protein 25 | ||||
Refseq | XP_028206945.1 | 1e-122 | LOB domain-containing protein 25-like | ||||
Refseq | XP_028206946.1 | 1e-122 | LOB domain-containing protein 25-like | ||||
Swissprot | Q8L8Q3 | 7e-68 | LBD25_ARATH; LOB domain-containing protein 25 | ||||
TrEMBL | A0A0R0FV53 | 1e-133 | A0A0R0FV53_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA16G07770.2 | 1e-123 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1091 | 34 | 112 | Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 1e-70 | LOB domain-containing protein 25 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.16G071700.1.p |
Publications ? help Back to Top | |||
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