PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.16G054500.1.p | ||||||||
Common Name | GLYMA_16G054500, LOC100792071 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | SBP | ||||||||
Protein Properties | Length: 366aa MW: 40583.6 Da PI: 7.4812 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.5 | 6.1e-41 | 74 | 151 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +C v+gC++dls+++eyhrrh+vCe+hsk+pvv+v g++qrfCqqCsrfh+l efDe krsCr+rL++hn+rrrk+q+ Glyma.16G054500.1.p 74 CCSVDGCNSDLSDCREYHRRHRVCEKHSKTPVVMVGGKQQRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQP 151 6**************************************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 7.1E-33 | 69 | 136 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32 | 72 | 149 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.96E-38 | 73 | 154 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.0E-31 | 75 | 148 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MDWDGKEFAW DPRGLELANG EGQKSEAASV DLRLGEEKTA PDVVAKDTKD SKTVSSPSGS 60 SKRSRLQNGL QNMCCSVDGC NSDLSDCREY HRRHRVCEKH SKTPVVMVGG KQQRFCQQCS 120 RFHSLGEFDE VKRSCRKRLD GHNRRRRKPQ PPSLFMAAEK FMYNYKGPRI LHFGSPEAYA 180 NPIMRDMWPA AAKTGAESGH DSPRLLYRID KHKQDKGHPL WQENDPKVGS GDEAMPGTPI 240 CQPIHGTIAP SMGGKSNRKL STDAKPGSFD SGCALYLLST LQSQSPELSM VQSSITCPVQ 300 SPSGSVHFDA VNEYACSETE RDKPSGQVLV FDAKTTNLHY NGMLQMDLDG FVENEDPLAL 360 PFLWE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 6e-27 | 75 | 148 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 131 | 148 | KRSCRKRLDGHNRRRRKP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.25953 | 0.0 | root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.16G054500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093751 | 0.0 | BT093751.1 Soybean clone JCVI-FLGm-17B4 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003549130.1 | 0.0 | teosinte glume architecture 1 | ||||
Refseq | XP_006599016.1 | 0.0 | teosinte glume architecture 1 | ||||
Refseq | XP_006599017.1 | 0.0 | teosinte glume architecture 1 | ||||
Refseq | XP_028207755.1 | 0.0 | teosinte glume architecture 1-like | ||||
Refseq | XP_028207756.1 | 0.0 | teosinte glume architecture 1-like | ||||
Refseq | XP_028207757.1 | 0.0 | teosinte glume architecture 1-like | ||||
TrEMBL | A0A0B2R3R1 | 0.0 | A0A0B2R3R1_GLYSO; Squamosa promoter-binding-like protein 16 | ||||
TrEMBL | K7MFC4 | 0.0 | K7MFC4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA16G05895.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10031 | 26 | 40 | Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 8e-43 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.16G054500.1.p |
Entrez Gene | 100792071 |