PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G050900.3.p
Common NameGLYMA_16G050900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family DBB
Protein Properties Length: 352aa    MW: 39293.1 Da    PI: 6.109
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G050900.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.87.9e-07333535
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHk 35
                          C+ +++k+++lfC+ ++  lC  C ++ H 
  Glyma.16G050900.3.p  3 PCDYCHSKPAILFCRPDSAKLCLLCDQHVHA 33
                         7**************************9995 PP
2zf-B_box18.44.6e-064584438
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                         ++C+ ++   + l C +++  lC+ C +e+H g      H+
  Glyma.16G050900.3.p 45 QICDSCKTDTAVLRCSTDNLVLCHHCDVETH-GaaasshHQ 84
                         69******99********************8.447777643 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.527146IPR000315B-box-type zinc finger
SMARTSM003365.6E-9146IPR000315B-box-type zinc finger
PfamPF006433.8E-5341IPR000315B-box-type zinc finger
CDDcd000215.86E-7346No hitNo description
PROSITE profilePS501199.3434288IPR000315B-box-type zinc finger
CDDcd000211.15E-44687No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MLPCDYCHSK PAILFCRPDS AKLCLLCDQH VHAANALSLK HVRFQICDSC KTDTAVLRCS  60
TDNLVLCHHC DVETHGAAAS SHHQRHRLHG LSGCPSVTEI VSALCLDFRA QDPVVPTAAS  120
GGRDEVYEQV LEIARQRNDD LGAEQLKFDE SPINDVVVVD EMLMQQTPFT SLLMLPNSES  180
EFDSRKSNDN NGYGTEAGDL LWNYNPAYQP PQVWDFQLQK SRDCHEPRVV TFDGLEVPKL  240
FQDEHNMKYS TIGDDIDILS RNNQSDQSSS SHAKKKEENN KKAKGGLSSE SKLFESIPYN  300
GTNNVVVMEH LVGGNENVGT LTARVSLEEL AKNRGDAMLR YKEKKKTRRY V*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.217140.0cotyledon| seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G050900.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0688970.0HM068897.1 Glycine max CONSTANS-like zinc finger protein (COL16) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003548956.10.0zinc finger protein CONSTANS-LIKE 15
TrEMBLA0A0R0FUI10.0A0A0R0FUI1_SOYBN; Uncharacterized protein
TrEMBLI1MLC50.0I1MLC5_SOYBN; CONSTANS-like zinc finger protein
STRINGGLYMA16G05540.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.21e-45B-box type zinc finger protein with CCT domain