PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G046700.2.p
Common NameGLYMA_16G046700, LOC100793469
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 317aa    MW: 36358.7 Da    PI: 10.0728
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G046700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.41.8e-2017107198
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ffk+  ++ +l+ g l++p+kf+e++g  +  +  l l++++g +W+++l  +k++g+++++kGWkeF++ + L  g  +vF+++g+s f
  Glyma.16G046700.2.p  17 FFKII-TAQNLQDGKLMIPNKFVEKYG--EGLPNALFLKTPNGTEWNFNL--EKHDGKIWFQKGWKEFAEYHSLAHGHLLVFRRHGTSHF 101
                          66666.889999999***********7..447789***************..*******************************9888888 PP

                          ..EEEEE- CS
                   B3  91 elvvkvfr 98 
                             v++f+
  Glyma.16G046700.2.p 102 --QVHIFD 107
                          ..999987 PP
2B3665.5e-21202302199
                          EEEE-..-HHHHT.T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlks.grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          f+ v+ ps+  ++ g l l  kf+++h g+ ++  + + l+ ++gr W  k+ +   k++  + lt+GWk Fvk+n+Lk+g +++F+l++
  Glyma.16G046700.2.p 202 FLVVMRPSYIQSNgGPLPLQTKFCRRHfGLLNK--RHINLQVLNGRIWPAKYMIqkMKNKTNFRLTSGWKTFVKDNNLKVGNVCTFELID 289
                          566777777777756689999******855533..4699*************7755566666***************************9 PP

                          SSEE..EEEEE-S CS
                   B3  87 rsefelvvkvfrk 99 
                           ++ +l+v++fr 
  Glyma.16G046700.2.p 290 GTKLTLLVHIFRG 302
                          9**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.37E-2511109IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.0E-2713108IPR015300DNA-binding pseudobarrel domain
CDDcd100171.31E-2015107No hitNo description
PROSITE profilePS5086314.25416109IPR003340B3 DNA binding domain
PfamPF023628.4E-1817107IPR003340B3 DNA binding domain
SMARTSM010194.2E-1917109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.6E-24193301IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-23195301IPR015300DNA-binding pseudobarrel domain
CDDcd100176.47E-22200301No hitNo description
PfamPF023626.3E-20202302IPR003340B3 DNA binding domain
SMARTSM010192.9E-13202303IPR003340B3 DNA binding domain
PROSITE profilePS5086312.858203303IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MEAATFPHQL QVKPFHFFKI ITAQNLQDGK LMIPNKFVEK YGEGLPNALF LKTPNGTEWN  60
FNLEKHDGKI WFQKGWKEFA EYHSLAHGHL LVFRRHGTSH FQVHIFDLSS LEIDYPSKGT  120
EGKTSPNHEG NKQPRNEENL EYLQPYQVRS HKSVKVENMM TLPEEAQPHT DTKFKEKSKV  180
VVANQVTALD LASSFKPCNP FFLVVMRPSY IQSNGGPLPL QTKFCRRHFG LLNKRHINLQ  240
VLNGRIWPAK YMIQKMKNKT NFRLTSGWKT FVKDNNLKVG NVCTFELIDG TKLTLLVHIF  300
RGTNGSNCST SQACQE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G046700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006598994.10.0B3 domain-containing transcription factor VRN1 isoform X2
TrEMBLI1ML850.0I1ML85_SOYBN; Uncharacterized protein
STRINGGLYMA16G05110.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.19e-44B3 family protein