PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G046300.1.p
Common NameGLYMA_16G046300, LOC100792421
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 236aa    MW: 25920.1 Da    PI: 5.2749
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G046300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-183483255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +y GVr+++ +gr++AeIrdps+   + r++lg+f+ta+eAa a+++a+++++g
  Glyma.16G046300.1.p 34 RYLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTADEAALAYDRAARAMRG 83
                         588******.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-213491IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-283490IPR001471AP2/ERF domain
PROSITE profilePS5103220.8373491IPR001471AP2/ERF domain
SMARTSM003807.3E-323497IPR001471AP2/ERF domain
CDDcd000188.34E-303490No hitNo description
PRINTSPR003672.1E-83546IPR001471AP2/ERF domain
PfamPF008478.6E-123583IPR001471AP2/ERF domain
PRINTSPR003672.1E-85773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MNPRTTSSSK AKKKQTTTTQ ESPHQRASSS WGGRYLGVRR RPWGRYAAEI RDPSTKERHW  60
LGTFDTADEA ALAYDRAARA MRGSRARTNF VYADTTPGSS VTPIISPDQP QPDPVLSFDP  120
FSLLAFPSGS YSASVAASQF SQQQQQPDNN NNNNIINNSN NNKDSTIELP PLPPDITSSV  180
GYEGFYNNDG GYYWEEDDNY LHNPMFSTMP AVSDNVAAAA GSSQVFDFGN SSFFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-193590359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-193290362ATERF1
3gcc_A3e-193290362ATERF1
5wx9_A8e-1933901371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in germinating seeds. Present in young shoots, at low levels, especially in leaf primordia and developing leaf blades. Also detected in vascular tissue, mostly in xylem, of young leaves, petioles and hypocotyls. {ECO:0000269|PubMed:11044410, ECO:0000269|PubMed:12472696, ECO:0000269|PubMed:16339853}.
Functional Description ? help Back to Top
Source Description
UniProtCell division-promoting factor involved in leaf blade differentiation, inflorescence branching, as well as in carpel and silique shape. Promotes the number of xylem cells. Regulates positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11044410, ECO:0000269|PubMed:12472696, ECO:0000269|PubMed:16339853}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G046300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By imbibition. {ECO:0000269|PubMed:16339853}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150374e-88AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014624311.11e-173ethylene-responsive transcription factor LEP
SwissprotQ9M6443e-49LEP_ARATH; Ethylene-responsive transcription factor LEP
TrEMBLA0A445GED31e-172A0A445GED3_GLYSO; Ethylene-responsive transcription factor LEP
TrEMBLK7MF751e-172K7MF75_SOYBN; Uncharacterized protein
STRINGGLYMA16G05070.21e-173(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39043161
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.13e-23ERF family protein
Publications ? help Back to Top
  1. van der Graaff E,Nussbaumer C,Keller B
    The Arabidopsis thaliana rlp mutations revert the ectopic leaf blade formation conferred by activation tagging of the LEP gene.
    Mol. Genet. Genomics, 2003. 270(3): p. 243-52
    [PMID:12910411]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Chandler JW
    Class VIIIb APETALA2 Ethylene Response Factors in Plant Development.
    Trends Plant Sci., 2018. 23(2): p. 151-162
    [PMID:29074232]