PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.16G043200.1.p | ||||||||
Common Name | GLYMA_16G043200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 354aa MW: 39812.1 Da PI: 9.1141 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.9 | 9.4e-54 | 8 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeel+ +yL kkv++ +l++ ++i+evdiyk++PwdLp+k++ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk Glyma.16G043200.1.p 8 LPPGFRFHPTDEELILHYLSKKVASIPLTV-SIIAEVDIYKLDPWDLPAKATFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDK 96 79**************************99.89***************988899************************************ PP NAM 91 evlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++ +e vg+kk Lvfykgr pkg+kt+W+mheyrl Glyma.16G043200.1.p 97 TIVTSlqggAQESVGVKKALVFYKGRPPKGVKTNWIMHEYRL 138 ****999877788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-64 | 5 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 62.303 | 8 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-27 | 9 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MGSPESNLPP GFRFHPTDEE LILHYLSKKV ASIPLTVSII AEVDIYKLDP WDLPAKATFG 60 EKEWYFFSPR DRKYPNGARP NRAAASGYWK ATGTDKTIVT SLQGGAQESV GVKKALVFYK 120 GRPPKGVKTN WIMHEYRLVD NNKPIKLKDS SMRLDDWVLC RIYKKSKHAL TSTEASIGVG 180 EVDQAEEHLF QETLLPISKS PAPPPQNTLI SQKSVSFSNL LDAMDYSILS SFLSENHTNH 240 PPGVGSSAGF NTGNLDQQCS PINNNNPTNN YMFQKNPQLN PSVSNMENMM RPKRQVSNMD 300 EETLYPSKKY LSSSCNFPTN ISNQYENPQW NYLMKQSLMN QRLMLGPHLQ FQG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-74 | 7 | 169 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-74 | 7 | 169 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-74 | 7 | 169 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-74 | 7 | 169 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-74 | 7 | 169 | 19 | 172 | NAC domain-containing protein 19 |
3swm_B | 2e-74 | 7 | 169 | 19 | 172 | NAC domain-containing protein 19 |
3swm_C | 2e-74 | 7 | 169 | 19 | 172 | NAC domain-containing protein 19 |
3swm_D | 2e-74 | 7 | 169 | 19 | 172 | NAC domain-containing protein 19 |
3swp_A | 2e-74 | 7 | 169 | 19 | 172 | NAC domain-containing protein 19 |
3swp_B | 2e-74 | 7 | 169 | 19 | 172 | NAC domain-containing protein 19 |
3swp_C | 2e-74 | 7 | 169 | 19 | 172 | NAC domain-containing protein 19 |
3swp_D | 2e-74 | 7 | 169 | 19 | 172 | NAC domain-containing protein 19 |
4dul_A | 1e-74 | 7 | 169 | 16 | 169 | NAC domain-containing protein 19 |
4dul_B | 1e-74 | 7 | 169 | 16 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.11065 | 0.0 | cotyledon| flower| hypocotyl| leaf| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00333 | DAP | Transfer from AT3G04070 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.16G043200.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF657308 | 0.0 | KF657308.1 Glycine max NAC transcription factor (SNAC62) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028206784.1 | 0.0 | NAC transcription factor 47-like | ||||
Swissprot | Q84TD6 | 1e-109 | NAC47_ARATH; NAC transcription factor 47 | ||||
TrEMBL | A0A445GE58 | 0.0 | A0A445GE58_GLYSO; NAC transcription factor 47 | ||||
TrEMBL | I1ML43 | 0.0 | I1ML43_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA16G04740.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6621 | 27 | 50 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.1 | 1e-110 | NAC domain containing protein 47 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.16G043200.1.p |
Publications ? help Back to Top | |||
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