PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G042900.1.p
Common NameGLYMA_16G042900, LOC100820105
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 408aa    MW: 46089.2 Da    PI: 6.6521
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G042900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM182.69.7e-57161431129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdee++++yL++kv+++ +++  +i e+d++k+ePwdLpkk+k +ekewyfF+++d+ky+tg r+nrat+sgyWkatgkdk
  Glyma.16G042900.1.p  16 LPPGFRFHPTDEEIITYYLTEKVKNSIFSA-IAIGEADLNKCEPWDLPKKAKIGEKEWYFFCQKDRKYPTGMRTNRATESGYWKATGKDK 104
                          79*************************999.88***************99999************************************* PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                          e+++ kg+lvg+kktLvfykgrapkgek++Wvmhe+rle
  Glyma.16G042900.1.p 105 EIYKGKGNLVGMKKTLVFYKGRAPKGEKSNWVMHEFRLE 143
                          ************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.98E-6013168IPR003441NAC domain
PROSITE profilePS5100557.94616167IPR003441NAC domain
PfamPF023652.5E-2917142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MEEPIVVNKG EEPLDLPPGF RFHPTDEEII TYYLTEKVKN SIFSAIAIGE ADLNKCEPWD  60
LPKKAKIGEK EWYFFCQKDR KYPTGMRTNR ATESGYWKAT GKDKEIYKGK GNLVGMKKTL  120
VFYKGRAPKG EKSNWVMHEF RLEGKFASYN LPKAAKDEWV VSRVFHKNTD VKKSSIPGLL  180
RINSIGDDLL DYSSLPSLMD PPYGNNTNTT NNNNNNANPL SSTKLSQSEG YYLPSFSINN  240
NHHQLLIKPE DHHNHRIYEF PTINFTSNQT NLSSNNVNPM GNNNTLSSQP LNMFSADYYV  300
HQNRIKSSIM PSVAGSGFVS DNNNHDEAIL RAFAAKNNEH IQCKMEQFSS NHSQDTGLSN  360
DRNTTDTSSV VSMGRNNNNR ALYEDLEGPS SVAPLSDLEC LQWDDDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-511417315171NO APICAL MERISTEM PROTEIN
1ut4_B3e-511417315171NO APICAL MERISTEM PROTEIN
1ut7_A3e-511417315171NO APICAL MERISTEM PROTEIN
1ut7_B3e-511417315171NO APICAL MERISTEM PROTEIN
4dul_A3e-511417315171NAC domain-containing protein 19
4dul_B3e-511417315171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.283350.0leaf| root
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G042900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312710.0KT031271.1 Glycine max clone HN_CCL_57 NAC transcription factor (Glyma16g04720.1_like2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003548767.10.0NAC domain-containing protein 87
RefseqXP_028208093.10.0NAC domain-containing protein 87-like
SwissprotQ9FK441e-109NAC87_ARATH; NAC domain-containing protein 87
TrEMBLA0A0R0FU940.0A0A0R0FU94_SOYBN; Uncharacterized protein
TrEMBLA0A445GEE50.0A0A445GEE5_GLYSO; NAC domain-containing protein 87
STRINGGLYMA16G04720.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.11e-103Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]