PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.16G023600.3.p | ||||||||
Common Name | GLYMA_16G023600, LOC100795763 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 714aa MW: 79224.3 Da PI: 6.4629 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.3 | 2.9e-23 | 134 | 234 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+lt sd++++g +++ +k+a+e+ + + +++l +d++g +W++k+iyr++++r++lt+GW+ Fv +++L +gD +vF Glyma.16G023600.3.p 134 FCKILTASDTSTHGGFSVLRKHATEClpaldmtQ--ATPTQELAAKDLHGFEWKFKHIYRGQPRRHLLTTGWSTFVASKRLVAGDAFVFL 221 99****************************9543..445569************************************************ PP E-SSSEE..EEEEE- CS B3 84 ldgrsefelvvkvfr 98 + + ++l+v+v+r Glyma.16G023600.3.p 222 --RGEHGQLRVGVRR 234 ..4489999****98 PP | |||||||
2 | Auxin_resp | 101.2 | 1.3e-33 | 260 | 339 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+ t+++F v+Y+Pr+ s+F+v ++k+++a+++k+s+GmRfkm+fe++ds+err+sGt+vgv d++ W+nS+WrsLk Glyma.16G023600.3.p 260 ASHAVMTRTMFLVYYKPRT--SQFIVGLNKYLEAVNNKFSLGMRFKMRFEGDDSPERRFSGTIVGVGDVSA-GWSNSQWRSLK 339 689***************6..9**********************************************777.*********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.83E-41 | 122 | 263 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.6E-40 | 126 | 249 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.24E-19 | 132 | 234 | No hit | No description |
SMART | SM01019 | 4.2E-20 | 134 | 236 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.561 | 134 | 236 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.6E-21 | 134 | 234 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.1E-31 | 260 | 339 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 4.7E-5 | 585 | 629 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 2.94E-12 | 589 | 669 | No hit | No description |
PROSITE profile | PS51745 | 27.357 | 593 | 674 | IPR000270 | PB1 domain |
Pfam | PF02309 | 4.5E-6 | 634 | 675 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 714 aa Download sequence Send to blast |
MAHLGCCNLG GPGSSGTSLP EKGLKDDDLY RELWKLCAGP LVDVPRTGDR VFYFPQGHME 60 QLQASTDQEL NQEIPHFNLP AKIFCRVVNI QLLAEQDTDE VYACIALLPE SDQTEPTNPD 120 PNISEPPKQK FHSFCKILTA SDTSTHGGFS VLRKHATECL PALDMTQATP TQELAAKDLH 180 GFEWKFKHIY RGQPRRHLLT TGWSTFVASK RLVAGDAFVF LRGEHGQLRV GVRRLARQQS 240 PMPSSVISSQ SMHLGVLATA SHAVMTRTMF LVYYKPRTSQ FIVGLNKYLE AVNNKFSLGM 300 RFKMRFEGDD SPERRFSGTI VGVGDVSAGW SNSQWRSLKV QWDEPATIPR PDRVSCWEIE 360 PFVASTALNV TQPAVKGKRS RPADVSSSGF WYHGSSNELS QLGAATAEVQ SKENQVVPCS 420 LRQKDIINSN PIDANNSSIS SRVRMEGVWP SSPHLNVTPN LFSDPNNNSV LARSPISGYL 480 NVPSRSSDGP TCEHVEDGKK IENSLDCWLF GVNLTNNCSN VIITTPSERE LRGPISSSVA 540 PSGPKESIPA AACETERVQT PNYSLSNKGQ KQIISEASPN EWQNKQATVP SMRTRTKVQM 600 QGVAVGRAFD LTTLSGYDDL IEELEKLFEI RGELHSQDKW AVTFTDDEND MMLVGDDPWP 660 EFCNMVKRIF ICSREDLKKM KCCKLPASSS EVEEVLLSPD SQNRDETQQS HMP* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-170 | 23 | 362 | 13 | 355 | Auxin response factor 1 |
4ldw_A | 1e-170 | 23 | 362 | 13 | 355 | Auxin response factor 1 |
4ldw_B | 1e-170 | 23 | 362 | 13 | 355 | Auxin response factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.27738 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.16G023600.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006598901.1 | 0.0 | auxin response factor 18 isoform X4 | ||||
Refseq | XP_028207360.1 | 0.0 | auxin response factor 18-like isoform X3 | ||||
Swissprot | Q6YVY0 | 0.0 | ARFG_ORYSJ; Auxin response factor 7 | ||||
TrEMBL | A0A445GDD1 | 0.0 | A0A445GDD1_GLYSO; Auxin response factor | ||||
TrEMBL | I1MKH9 | 0.0 | I1MKH9_SOYBN; Auxin response factor | ||||
STRING | GLYMA16G02650.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G23980.2 | 0.0 | auxin response factor 9 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.16G023600.3.p |
Entrez Gene | 100795763 |
Publications ? help Back to Top | |||
---|---|---|---|
|