PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.16G017400.2.p | ||||||||
Common Name | GLYMA_16G017400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 751aa MW: 82412.4 Da PI: 6.1955 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.6 | 2.2e-16 | 24 | 68 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ ++++a k++G W +I +++g ++t+ q++s+ qk+ Glyma.16G017400.2.p 24 RERWTEEEHNRFLEALKLHGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.12E-16 | 18 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.226 | 19 | 73 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 9.7E-16 | 22 | 71 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.3E-12 | 23 | 71 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-8 | 23 | 64 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.8E-13 | 24 | 67 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.46E-9 | 26 | 69 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0042754 | Biological Process | negative regulation of circadian rhythm | ||||
GO:0043433 | Biological Process | negative regulation of sequence-specific DNA binding transcription factor activity | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 751 aa Download sequence Send to blast |
MDAYSSGEEV VVKTRKPYTI TKQRERWTEE EHNRFLEALK LHGRAWQRIE EHIGTKTAVQ 60 IRSHAQKFFT KLEKEALVKG VPIGQALDID IPPPRPKRKP NNPYPRKTRI GTTSLHSGAK 120 DGKLNLVESS HVNQALDLKK EPLPEKHDLD EGLTTVKENK DENHAKVFTL LQEVPCSSVS 180 SANESSITMS VPLGNPCAFK EITPSVKEVI ARDEKTESFV TVEPENGKLE INDGKQTNGT 240 SKDSRLEDSD ALHMKLVQNE KPDGLDCELT IDGMQGNQNY PRHVTVHVVD GNLGTNTQNP 300 SQDMLFRDSM FQPIGGVNGQ RNVFTNTAPS NTSESQNNTA RSSVHQSFLP YPPFTQHNQD 360 DYQSFLHMSS TFSNLIVSTL MQNPAAHAAA SFAATFWPYA NPETSANSPR CSQGGFTNRQ 420 IGSPPSVAAI AAATVAAATA WWAAHGLLPL CAPLHTSFAC PASVTTVPSM NTGEAPALKA 480 EQEKTTLQNP PLQDQMLDPE YSEAQQAQHS ASKSPAAILS DSESGDAKLN TSSKVTDHET 540 NKTISEHLDS NKTKGRKPVD RSSCGSNTAS SSDVETDALE KGEKGKEEPE IPDANQLAIE 600 FSNRRRSVSN LTDSWKEVSE EGRLAFQALF SREVLPQSFS PPHALKNTDH QMDNANDNKQ 660 NIDDKDEDLD GSKKCSSNYE AMQKNLLFVE NNEGLLTIGL GQGKLKTHRT GFKPYKRCSM 720 EAKENRVGAS SNQGEEQGCK RIRLEGETST * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.32583 | 0.0 | cotyledon| flower| hypocotyl| leaf| meristem| pod| root| seed coat| stem |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00119 | DAP | Transfer from AT1G01060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.16G017400.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU076433 | 0.0 | EU076433.1 Glycine max late elongated hypocotyl and circadian clock associated-1-like protein 1 (LCL1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001235187.2 | 0.0 | late elongated hypocotyl and circadian clock associated-1-like protein 1 | ||||
Refseq | XP_006598675.1 | 0.0 | late elongated hypocotyl and circadian clock associated-1-like protein 1 isoform X1 | ||||
Refseq | XP_006598678.1 | 0.0 | late elongated hypocotyl and circadian clock associated-1-like protein 1 isoform X1 | ||||
Refseq | XP_014623886.1 | 0.0 | late elongated hypocotyl and circadian clock associated-1-like protein 1 isoform X1 | ||||
Refseq | XP_014623887.1 | 0.0 | late elongated hypocotyl and circadian clock associated-1-like protein 1 isoform X1 | ||||
Refseq | XP_014623888.1 | 0.0 | late elongated hypocotyl and circadian clock associated-1-like protein 1 isoform X1 | ||||
Refseq | XP_014623889.1 | 0.0 | late elongated hypocotyl and circadian clock associated-1-like protein 1 isoform X1 | ||||
Refseq | XP_014623890.1 | 0.0 | late elongated hypocotyl and circadian clock associated-1-like protein 1 isoform X1 | ||||
Refseq | XP_014623891.1 | 0.0 | late elongated hypocotyl and circadian clock associated-1-like protein 1 isoform X1 | ||||
Refseq | XP_014623892.1 | 0.0 | late elongated hypocotyl and circadian clock associated-1-like protein 1 isoform X1 | ||||
TrEMBL | I1MKB1 | 0.0 | I1MKB1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA16G01980.8 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01060.3 | 1e-134 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.16G017400.2.p |
Entrez Gene | 100271888 |
Publications ? help Back to Top | |||
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