PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G017100.3.p
Common NameGLYMA_16G017100, LOC100781424
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 503aa    MW: 56723.1 Da    PI: 7.4026
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G017100.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B396.32.1e-30115213193
                          EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-. CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld. 85 
                          f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  
  Glyma.16G017100.3.p 115 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSANEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGv 204
                          89***************************966667889*************************************************543 PP

                          SS.SEE..E CS
                   B3  86 gr.sefelv 93 
                          g+  + +l+
  Glyma.16G017100.3.p 205 GEsYRHRLY 213
                          444444455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.4E-42104222IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.55E-30111219IPR015300DNA-binding pseudobarrel domain
CDDcd100176.34E-26113214No hitNo description
PfamPF023627.4E-28115218IPR003340B3 DNA binding domain
SMARTSM010197.3E-23115220IPR003340B3 DNA binding domain
PROSITE profilePS5086314.24115218IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MELMQEVKGY SDSREEEEEE EGAAEEESSR LLHQHQDAAG SNFIINNNQH HQHHHTTKQL  60
DFMDLSLGSS KDEGNLPGSS SSVYAHHHAA SGSSSVNGNN NLQQQQQPAE KEHMFDKVVT  120
PSDVGKLNRL VIPKQHAEKY FPLDSSANEK GLLLNFEDRN GKLWRFRYSY WNSSQSYVMT  180
KGWSRFVKEK KLDAGDIVSF QRGVGESYRH RLYIDWKRRR DHHHHHHHGP VDPSTTLFTP  240
FFLPNQPHHL MSIRWGATDR LYSLPSPTPP RHHDHLQHQQ PLNYNNNTMY HPFHHHGGGS  300
GINGTTHHYN NYYHEMSSTT NTTTSGSGSV FYLRSTPPSM PLADHQTLNT RQQQQQQQQQ  360
QQQEGGGNVS LPPMIIDSVP VAHHLHHHHH QHQHQHQHHG GKSSGSSSPS TAGKRLRLFG  420
VNMECASSTT SEDHPKCFSL LSSSSSMANS NSSLPPLQLL REDTLSSSAA AAARFGDQRG  480
GVGEPSTSIF FDLDPSLQYR KR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-631092192113B3 domain-containing transcription factor NGA1
5os9_B2e-631092192113B3 domain-containing transcription factor NGA1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.340600.0cotyledon| leaf| pod
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G017100.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352930.0AC235293.1 Glycine max strain Williams 82 clone GM_WBb0059D15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014624619.10.0B3 domain-containing transcription factor NGA2 isoform X2
RefseqXP_028207764.10.0B3 domain-containing transcription factor NGA2-like
RefseqXP_028207766.10.0B3 domain-containing transcription factor NGA2-like
RefseqXP_028207767.10.0B3 domain-containing transcription factor NGA2-like
TrEMBLA0A445GD210.0A0A445GD21_GLYSO; B3 domain-containing protein isoform B
TrEMBLK7MEN50.0K7MEN5_SOYBN; Uncharacterized protein
STRINGGLYMA16G01951.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-67B3 family protein