PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G007600.1.p
Common NameGLYMA_16G007600, LOC100814760
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRF
Protein Properties Length: 361aa    MW: 40951 Da    PI: 8.4531
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G007600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC794.5e-2578122145
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                          d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e 
  Glyma.16G007600.1.p  78 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEV 122
                          79****************************************985 PP
2QLQ48.72.3e-171247136
                  QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                         s+FT  Q+q+L++Q+l++Ky++ + P+Pp+L+  i+
  Glyma.16G007600.1.p 12 SPFTQIQWQELEQQALVFKYMVTGTPIPPDLIYSIK 47
                         89*****************************98886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.7E-101248IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.3161348IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088808.3E-131346IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.32578122IPR014977WRC domain
PfamPF088793.3E-2179121IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MMSASAGARN RSPFTQIQWQ ELEQQALVFK YMVTGTPIPP DLIYSIKRSL DTSISSRLFP  60
HHPIGWGCFE MGFGRKVDPE PGRCRRTDGK KWRCSKEAYP DSKYCERHMH RGRNRSRKPV  120
EVSSATSTAT NTSQTIPSSY TRNLSLTNNS NPNITPPPPP SSFPFSHLPS SMPIDQSQPF  180
SQSYQNSSLN PFFYSQSTSS RPPDADFPPQ DATTHHLFMD SAGSYSHDEK NYSRHVHGIR  240
EDVDERAFFP EASGSARSYT DSYQQLSMSS YKSYSNSNFQ NINNDATTNP RQQEQQLQQQ  300
QHCFVLGTDF KSTRPSKEKE AETTTGQRPL HRFFGEWPPK NTTTDSWLDL ASNSRIQTDE  360
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.221940.0somatic embryo| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G007600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2359130.0AC235913.2 Glycine max clone GM_WBc0225O09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003547719.20.0growth-regulating factor 5 isoform X3
TrEMBLK7MEH10.0K7MEH1_SOYBN; Uncharacterized protein
STRINGGLYMA16G00971.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97443137
Representative plantOGRP4601684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.17e-63growth-regulating factor 5