PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G266500.1.p
Common NameGLYMA_15G266500, LOC100815632
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 327aa    MW: 37509.3 Da    PI: 7.1186
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G266500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.23.8e-54101391128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvka.eekewyfFskrdkkyatgkrknratksgyWkatg 87 
                          +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+evd++k+ePwdL+ k ++ +  ++ewyfFs++dkky+tg+r+nrat++g+Wkatg
  Glyma.15G266500.1.p  10 VPPGFRFHPTDEELLYYYLRKKVSYEVIDL-DVIREVDLNKLEPWDLKdKcRIGSgPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATG 98 
                          69****************************.9***************943444443456******************************* PP

                  NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +dk++++++++ +g++ktLvfy+grap+g+ktdW+mheyrl
  Glyma.15G266500.1.p  99 RDKSIYHTNSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRL 139
                          ***************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-595159IPR003441NAC domain
PROSITE profilePS5100558.30610159IPR003441NAC domain
PfamPF023653.9E-2811139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MMPGNGQLTV PPGFRFHPTD EELLYYYLRK KVSYEVIDLD VIREVDLNKL EPWDLKDKCR  60
IGSGPQNEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KSIYHTNSKR IGMRKTLVFY  120
TGRAPHGQKT DWIMHEYRLD EDDADVQEDG WVVCRVFKKK NQSRGFQQEL EEEEHLTTHM  180
RASGPCQVLE QKHLHMQGGP YDHYNFDGTM HLPQLFSPES AIAPPTNSSL ALSMNAMDIL  240
ECSQNLLRLT TTGCGLNLMQ QQQEERFSGD WSFLDKLLAS HHGMDQSKCN PPTNHHAATA  300
VGTSAQKFPF HYLGCDTTHD IMKFSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-52716414170NO APICAL MERISTEM PROTEIN
1ut4_B3e-52716414170NO APICAL MERISTEM PROTEIN
1ut7_A3e-52716414170NO APICAL MERISTEM PROTEIN
1ut7_B3e-52716414170NO APICAL MERISTEM PROTEIN
3swm_A3e-52716417173NAC domain-containing protein 19
3swm_B3e-52716417173NAC domain-containing protein 19
3swm_C3e-52716417173NAC domain-containing protein 19
3swm_D3e-52716417173NAC domain-containing protein 19
3swp_A3e-52716417173NAC domain-containing protein 19
3swp_B3e-52716417173NAC domain-containing protein 19
3swp_C3e-52716417173NAC domain-containing protein 19
3swp_D3e-52716417173NAC domain-containing protein 19
4dul_A3e-52716414170NAC domain-containing protein 19
4dul_B3e-52716414170NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.624530.0root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed at early heart stage onward in all root basal daughter cells resulting from horizontal divisions in the COL progenitors and is later maintained in these cells. Present in root stem cell daughters and accumulates in maturing root cap layers. Detectable from very early stages of lateral root development. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}.
UniprotTISSUE SPECIFICITY: Accumulates in maturing root cap cells, in both COL and LRC cells. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G266500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-125AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006598233.10.0NAC domain-containing protein 76
RefseqXP_028203323.10.0NAC domain-containing protein 76-like
SwissprotQ9MA171e-117SMB_ARATH; Protein SOMBRERO
TrEMBLA0A0B2S4H80.0A0A0B2S4H8_GLYSO; Protein SOMBRERO
TrEMBLA0A445GYP70.0A0A445GYP7_GLYSO; Protein SOMBRERO isoform A
TrEMBLI1MJG90.0I1MJG9_SOYBN; Uncharacterized protein
STRINGGLYMA15G42050.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72043447
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.31e-108NAC family protein
Publications ? help Back to Top
  1. Fendrych M, et al.
    Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis.
    Curr. Biol., 2014. 24(9): p. 931-40
    [PMID:24726156]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Karve R,Suárez-Román F,Iyer-Pascuzzi AS
    The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release.
    Plant Physiol., 2016. 171(3): p. 2101-11
    [PMID:27221617]
  4. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]