PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G264100.1.p
Common NameGLYMA_15G264100, LOC100808325
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 348aa    MW: 39765.9 Da    PI: 4.7669
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G264100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM183.45.6e-5761331128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lppGfrFhPtdeelv +yL++k++g+++el ++i+evd+yk+ePwdLp k  + +++ ewyf+s+rd+ky++g+r+nrat++gyWkatgk
  Glyma.15G264100.1.p   6 LPPGFRFHPTDEELVAYYLERKITGRSIEL-DIIAEVDLYKCEPWDLPdKsFLPSKDMEWYFYSPRDRKYPNGSRTNRATQAGYWKATGK 94 
                          79****************************.99**************96435566888******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d++v+s ++++vg+kktLv+y+grap+g +t+Wvmheyrl
  Glyma.15G264100.1.p  95 DRPVHS-QKKQVGMKKTLVYYRGRAPHGIRTNWVMHEYRL 133
                          ******.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-643157IPR003441NAC domain
PROSITE profilePS5100560.4496157IPR003441NAC domain
PfamPF023653.2E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MAPMSLPPGF RFHPTDEELV AYYLERKITG RSIELDIIAE VDLYKCEPWD LPDKSFLPSK  60
DMEWYFYSPR DRKYPNGSRT NRATQAGYWK ATGKDRPVHS QKKQVGMKKT LVYYRGRAPH  120
GIRTNWVMHE YRLIESVPGA TLSSLKDSYS LCRIFKKTIQ IPAKTNNKEE EQVENAKKES  180
MWISEEQMLG EDSSGTEISR EMEAVDEKIL NHEHPKFPCD ASSSDLTQGT CTPTDTGIAE  240
DFQPQFACDE ANSAANSYTM GIGYPTNLFQ DVQIPSYAGM HYQLPYTPLV MEDFPQINLP  300
ETKITKPEVT DDCMLYDRYR DCMNGTLEEI ISLCCTQDNS VPFPMLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-59115712165NO APICAL MERISTEM PROTEIN
1ut4_B3e-59115712165NO APICAL MERISTEM PROTEIN
1ut7_A3e-59115712165NO APICAL MERISTEM PROTEIN
1ut7_B3e-59115712165NO APICAL MERISTEM PROTEIN
3swm_A2e-59115715168NAC domain-containing protein 19
3swm_B2e-59115715168NAC domain-containing protein 19
3swm_C2e-59115715168NAC domain-containing protein 19
3swm_D2e-59115715168NAC domain-containing protein 19
3swp_A2e-59115715168NAC domain-containing protein 19
3swp_B2e-59115715168NAC domain-containing protein 19
3swp_C2e-59115715168NAC domain-containing protein 19
3swp_D2e-59115715168NAC domain-containing protein 19
4dul_A3e-59115712165NAC domain-containing protein 19
4dul_B3e-59115712165NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in a few sieve element cells before enucleation and in phloem-pole pericycle cells. {ECO:0000269|PubMed:25081480}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00205DAPTransfer from AT1G54330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G264100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-125AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003546832.10.0NAC domain-containing protein 86
RefseqXP_028203662.10.0NAC domain-containing protein 86-like
SwissprotQ9FFI51e-84NAC86_ARATH; NAC domain-containing protein 86
TrEMBLA0A445GYN20.0A0A445GYN2_GLYSO; NAC domain-containing protein 86
TrEMBLK7ME200.0K7ME20_SOYBN; Uncharacterized protein
STRINGGLYMA15G41825.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105083341
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.11e-103NAC domain containing protein 20
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]