PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G264000.1.p
Common NameGLYMA_15G264000, LOC100811532
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 326aa    MW: 36962.4 Da    PI: 6.3451
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G264000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.6e-171360148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg W++eEde+l+++++ +G ++W+++++  g+ R++k+c++rw +yl
  Glyma.15G264000.1.p 13 RGLWSPEEDEKLLRYINTHGQKSWSSVPKFAGLQRCGKSCRLRWINYL 60
                         788*******************************************97 PP
2Myb_DNA-binding55.61.3e-1766109146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg++T+eE+++++d ++ lG++ W+ Ia++++ gRt++++k++w++
  Glyma.15G264000.1.p  66 RGSFTAEEEQIIIDIHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                          89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-25563IPR009057Homeodomain-like
PROSITE profilePS5129418.178860IPR017930Myb domain
SuperFamilySSF466897.81E-3010107IPR009057Homeodomain-like
SMARTSM007175.0E-141262IPR001005SANT/Myb domain
PfamPF002492.3E-161360IPR001005SANT/Myb domain
CDDcd001678.92E-121660No hitNo description
PROSITE profilePS5129426.46861115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-2664116IPR009057Homeodomain-like
SMARTSM007171.8E-1665113IPR001005SANT/Myb domain
PfamPF002498.4E-1666109IPR001005SANT/Myb domain
CDDcd001674.50E-1268108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MGHRCCSKQK IKRGLWSPEE DEKLLRYINT HGQKSWSSVP KFAGLQRCGK SCRLRWINYL  60
RPDLKRGSFT AEEEQIIIDI HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLISQGL  120
DPQTHTLLSS HRRSSVCTIS NIHQNSNSIF IMSSHIPNAP LENTSKTFST LPKPPANIVQ  180
IPSVDVSSEF QTTTSNNGEP RQHLTYELLM ENAITNICSP TYMNPSAVEL FNNDNNVNWV  240
STVNVEDFSA QTLEEGTQVQ VQVQHEKDKT CEDMGIDVRE ANNGNIETSA SFESSNFDFG  300
LLESVLTSEF ISYDFNCMDE LAWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-31131157108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G264000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003545941.10.0transcription factor MYB86
TrEMBLK7ME190.0K7ME19_SOYBN; Uncharacterized protein
STRINGGLYMA15G41810.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34663267
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.12e-88myb domain protein 67