PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G261300.2.p
Common NameGLYMA_15G261300, LOC100799981
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YC
Protein Properties Length: 255aa    MW: 28472.4 Da    PI: 6.7442
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G261300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC175.74.5e-55671711102
                NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 
                          ql++fw++q   ie++ dfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++r d
  Glyma.15G261300.2.p  67 QLQMFWSNQmqeIEQTIDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRND 156
                          89******988889**************************************************************************** PP

                NF-YC  88 ifdflvdivprdelk 102
                          +fdflvdi+prdelk
  Glyma.15G261300.2.p 157 VFDFLVDIIPRDELK 171
                          ************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.84E-3446161IPR009072Histone-fold
PfamPF008082.1E-2189152IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.8E-3790167IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGVATGASQM AYSSHYPTAP MVASGTPAVA VPSPTQAPAA FSSSAHQLAY QQAQHFHHQQ  60
QQHQQQQLQM FWSNQMQEIE QTIDFKNHSL PLARIKKIMK ADEDVRMISA EAPVIFAKAC  120
EMFILELTLR SWIHTEENKR RTLQKNDIAA AISRNDVFDF LVDIIPRDEL KEEGLGITKA  180
TIPLVNSPAD MPYYYVPPQH PVVGPPGMIM GKPVGAEQAT LYSTQQPRPP MAFMPWPHTQ  240
PQQQQPPQHQ QTDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B4e-5775167395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139145RRTLQKN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.565370.0cotyledon| meristem| pod| seed coat| somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G261300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0992820.0BT099282.1 Soybean clone JCVI-FLGm-23D16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006597045.10.0nuclear factor Y transcription factor isoform X3
RefseqXP_014622845.10.0nuclear factor Y transcription factor isoform X2
RefseqXP_028204214.10.0nuclear transcription factor Y subunit C-2-like isoform X2
SwissprotQ8LCG76e-79NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLA0A445GYI30.0A0A445GYI3_GLYSO; Nuclear transcription factor Y subunit C-2 isoform A
TrEMBLA0A445GYJ60.0A0A445GYJ6_GLYSO; Nuclear transcription factor Y subunit C-2 isoform D
TrEMBLC6TNG00.0C6TNG0_SOYBN; Uncharacterized protein
TrEMBLK7ME090.0K7ME09_SOYBN; Uncharacterized protein
STRINGGLYMA15G41486.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.25e-77nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li S, et al.
    HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis.
    Plant Cell, 2014. 26(4): p. 1764-1780
    [PMID:24728648]
  3. Mei X, et al.
    Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm.
    Mol. Genet. Genomics, 2015. 290(5): p. 1819-31
    [PMID:25851237]
  4. Baud S, et al.
    Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed.
    Plant Physiol., 2016. 171(2): p. 1099-112
    [PMID:27208266]
  5. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]