PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G257700.1.p
Common NameGLYMA_15G257700, LOC100790471
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 319aa    MW: 36939 Da    PI: 7.4201
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G257700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.21.7e-49271553128
                  NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                          pGfrFhPtdeelv++yL++k+++k++++ e ik++diyk++PwdLp ++++++eke yfF++r +ky+++ r+nr+t sg+Wkatg dk+
  Glyma.15G257700.1.p  27 PGFRFHPTDEELVSFYLQRKLDKKPISI-ELIKQIDIYKYDPWDLPkTSATGGEKEGYFFCRRGRKYRNSIRPNRVTGSGFWKATGIDKP 115
                          9***************************.89***************44666688899********************************* PP

                  NAM  92 vlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          v+s+   ++  +glkktLv+y+g+a kg ktdW+mhe+rl
  Glyma.15G257700.1.p 116 VYSHggeGNDCIGLKKTLVYYRGSAGKGIKTDWMMHEFRL 155
                          ***96555555***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-5424190IPR003441NAC domain
PROSITE profilePS5100552.40125190IPR003441NAC domain
PfamPF023651.6E-2427155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGVNEDFNQD IDYDHHEYVD DDDVPLPGFR FHPTDEELVS FYLQRKLDKK PISIELIKQI  60
DIYKYDPWDL PKTSATGGEK EGYFFCRRGR KYRNSIRPNR VTGSGFWKAT GIDKPVYSHG  120
GEGNDCIGLK KTLVYYRGSA GKGIKTDWMM HEFRLPSNTD NNNTNLRSSK NYVDVPQEAE  180
IWTLCRIFKR NVSQRKHTPD LKQISAKRQS IHDKSSRMSN VEFNTTNQES YINFGGHYHN  240
EQKPTINYTN SDQRNQYHVM THHQLCAPVA QQHQQPQQLT SPSSNFWINN PPGNDFFTFD  300
NWDELGSLVK FAVDSPSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-462719619171NO APICAL MERISTEM PROTEIN
1ut4_B3e-462719619171NO APICAL MERISTEM PROTEIN
1ut7_A3e-462719619171NO APICAL MERISTEM PROTEIN
1ut7_B3e-462719619171NO APICAL MERISTEM PROTEIN
4dul_A3e-462719619171NAC domain-containing protein 19
4dul_B3e-462719619171NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00353DAPTransfer from AT3G12910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G257700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0968980.0BT096898.1 Soybean clone JCVI-FLGm-15F10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241333.10.0uncharacterized protein LOC100790471
SwissprotQ9SK554e-83NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLC6TGY80.0C6TGY8_SOYBN; Uncharacterized protein
STRINGGLYMA15G40950.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101334112
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.15e-84NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]