PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G236400.1.p
Common NameGLYMA_15G236400, LOC100806195
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 502aa    MW: 56552 Da    PI: 4.4743
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G236400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.12e-08439492146
                          TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHT....TTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg....tWktIartmg....kgRtlkqcksrwqk 46 
                          r+ WT+eE++ l+++v ++ ++     W++I +       k+Rt+ ++k++w +
  Glyma.15G236400.1.p 439 RLLWTAEEEKVLKEGVSKFSTEnqniPWRKILEFGCrvfdKTRTPVDLKDKWKN 492
                          677****************************9987799**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579032.44E-766127IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.2E-572126IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd154895.79E-775123No hitNo description
SMARTSM002492.8E-475124IPR001965Zinc finger, PHD-type
PROSITE patternPS01359076123IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.601.5E-9432497IPR009057Homeodomain-like
PROSITE profilePS512949.675434498IPR017930Myb domain
SuperFamilySSF466891.35E-9437495IPR009057Homeodomain-like
SMARTSM007172.2E-5438496IPR001005SANT/Myb domain
PfamPF002491.6E-5441492IPR001005SANT/Myb domain
CDDcd116608.08E-12442494No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MRRKSKGKRR RAAPATTLTS PSLSAIPILS DEHNNNAPTA FDTDCDDDNN ALHHRGSEPE  60
PEPELEPVDI FDKTICIHCD NKGEEAEGVL ICGGRGCPVA VHATCLGFEP EFDDSGNFCC  120
PYCWYKRAVD TCRRLREKAM KAKGELSRFF GQSRAGATDY SAAARVDPVV QDSEELMEET  180
ETEEQSEENK DEEGMVEESE KLVEGKETES EENKEEVEGK VQDSEELVEE METETEGQTE  240
ENKDEEGEAR VGADSSAAAR KNPVQDGEEI VVEGMETELE AQSGENKDEE GKVRDSGELV  300
EEMERETGAE VQPEENKDEG KVQDSEELLE ETETETEGQS EEKKDEEGKV AVMSSSVSET  360
NDSESVAEAV KKRKDQKKKK VASSRKSLSR QQEHKNKHYK TRGKFANKDE EEVTSFKSIS  420
LRQQPQRMKQ SSLTAKRRRL LWTAEEEKVL KEGVSKFSTE NQNIPWRKIL EFGCRVFDKT  480
RTPVDLKDKW KNIISKKGWK N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1435439KRRRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.384210.0root| seed coat| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G236400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-46AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006598111.10.0neurofilament medium polypeptide
TrEMBLK7MDG10.0K7MDG1_SOYBN; Uncharacterized protein
STRINGGLYMA15G37810.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120552022
Representative plantOGRP1443713
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49850.12e-06telomere repeat binding factor 3