PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G235000.1.p
Common NameGLYMA_15G235000, LOC100790311
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family SRS
Protein Properties Length: 323aa    MW: 35013.6 Da    PI: 7.7249
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G235000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702175.72.1e-541262816154
               DUF702   6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel.kskkqsalsstklssa 94 
                            CqdCGn+ak+dC+++RCRtCCk rgfdC+thvkstWvp+++rr   +           + + +askr r+l +sk+ +a+s++++s+a
  Glyma.15G235000.1.p 126 RVCQDCGNRAKRDCSFRRCRTCCKGRGFDCSTHVKSTWVPVSHRRGGSNSGGDH----YDDDDGNASKRLRTLgSSKNVAATSHSSTSNA 211
                          47*******************************************964443333....33445566777777645667788889999999 PP

               DUF702  95 eskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                          +++k+++tss          lP++v+++avfrc rvs++  ge+e+aY ++v+i+GhvfkG+Lyd+G+++
  Glyma.15G235000.1.p 212 TPTKSFDTSScqqdagfkqsLPRHVRAPAVFRCHRVSAIGSGEDEIAYMATVHISGHVFKGFLYDHGADT 281
                          99999999999999999999***********************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051425.0E-52127280IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.7E-24127169IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.3E-22232278IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MNMLGLRDLF LIAPTPSQLH HHQQHQHQNQ PISAEHHSNL PLPSQASLSV GLGIFPLLTV  60
PHTNDVHAQV QDCANNNTNN TNTNYWNLKM CGPTEVNSTR KGVMNMEDEG SNKQMMESEE  120
SGGEFRVCQD CGNRAKRDCS FRRCRTCCKG RGFDCSTHVK STWVPVSHRR GGSNSGGDHY  180
DDDDGNASKR LRTLGSSKNV AATSHSSTSN ATPTKSFDTS SCQQDAGFKQ SLPRHVRAPA  240
VFRCHRVSAI GSGEDEIAYM ATVHISGHVF KGFLYDHGAD TRNDVPSVSE LQLGNNGSGK  300
NTNRECSSAI GVPTSAYPAS VC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.361270.0flower| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G235000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0973460.0BT097346.1 Soybean clone JCVI-FLGm-16G15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003546717.10.0protein LATERAL ROOT PRIMORDIUM 1
TrEMBLI1MIQ80.0I1MIQ8_SOYBN; Uncharacterized protein
STRINGGLYMA15G37600.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57043154
Representative plantOGRP13131549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.28e-49Lateral root primordium (LRP) protein-related