PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.15G225300.1.p | ||||||||
Common Name | GLYMA_15G225300, LOC100785877 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 534aa MW: 58736.3 Da PI: 4.7535 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.3 | 3.6e-18 | 37 | 84 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed++lvd+vk++G g+W+++ ++ g+ R++k+c++rw ++l Glyma.15G225300.1.p 37 KGPWTSTEDDILVDYVKKHGEGNWNAVQKHTGLLRCGKSCRLRWANHL 84 79******************************99**********9986 PP | |||||||
2 | Myb_DNA-binding | 48.5 | 2e-15 | 90 | 133 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ ++++++++G++ W++ a++++ gRt++++k++w++ Glyma.15G225300.1.p 90 KGAFTAEEERVIAELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 133 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.104 | 32 | 84 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.27E-29 | 36 | 131 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.4E-15 | 36 | 86 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-16 | 37 | 84 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-23 | 38 | 90 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.20E-11 | 39 | 84 | No hit | No description |
PROSITE profile | PS51294 | 23.377 | 85 | 139 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-15 | 89 | 137 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-14 | 90 | 133 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.9E-25 | 91 | 137 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.58E-11 | 92 | 133 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 534 aa Download sequence Send to blast |
MRQMKIDIED EVLPNDMSGT QLNDESYEGG AGIVLKKGPW TSTEDDILVD YVKKHGEGNW 60 NAVQKHTGLL RCGKSCRLRW ANHLRPNLKK GAFTAEEERV IAELHAKMGN KWARMAAHLP 120 GRTDNEIKNY WNTRIKRCQR AGLPLYPPEV SLQALQESQH SQSSGGLNGG EKMHPDFLQK 180 NSFEIHDGIF DSLKDNQGIL PYVHELSDIS VYGNMLKGLD SSQYCSFVPP TLPKCKRLKE 240 STIPFIDSCD MKKYDLYSFD QIRDNNSNKI AQSFGMQAPL DPGPSSHSSM CYSHSLSNGN 300 SSTSKPYEAV KLELPSLQYP ELDLGSWGSS PPPSLLESVD DFLQSPTPIS TLESDCSSPQ 360 NSGLLDALLY QAKTMSSSKN HCSDKSSNSS TATPGDRADS SALNVYETEW EDYADPVSPF 420 GATSILNECT GLRANMNSLN EQLPVQTITG DLPNLESVDQ VWTPDSENQT LSLLNNTCPD 480 FLLTSDWYDL GSGHGKNQAI STDAATAFLG DDLATDHKYM TAGTSITMFG NPF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-32 | 35 | 137 | 5 | 106 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.24161 | 0.0 | cotyledon |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.15G225300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU328398 | 0.0 | EU328398.1 Glycine max GAMYB protein (GAMYB) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006598058.1 | 0.0 | transcription factor MYB33 | ||||
Refseq | XP_006598061.1 | 0.0 | transcription factor MYB33 | ||||
Refseq | XP_014622864.1 | 0.0 | transcription factor MYB33 | ||||
Refseq | XP_025981678.1 | 0.0 | transcription factor MYB33 | ||||
TrEMBL | A0A0B2QV04 | 0.0 | A0A0B2QV04_GLYSO; Transcription factor GAMYB | ||||
TrEMBL | K7MD72 | 0.0 | K7MD72_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA15G35860.4 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2047 | 34 | 85 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06100.3 | 1e-108 | myb domain protein 33 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.15G225300.1.p |
Entrez Gene | 100785877 |